Docker Fizkin

Build or grab Jellyfish binaries:

http://www.genome.umd.edu/jellyfish.html#Release

Install needed Perl modules here:

$ cpanm -l . --self-contained --installdeps .

Build Docker image:

$ docker build -t fizkin .

Run with args:

$ docker run --rm -v /path/to/data:/work -w /work fizkin \
  run-fizkin --input_dir /work/fasta --output_dir /work/out

See Also

http://github.com/hurwitzlab/fizkin

Authors

• Bonnie Hurwitz bhurwitz@email.arizona.edu
• Ken Youens-Clark kyclark@email.arizona.edu