Cannot load this model

[ugurdogrusoz]

This model imported from Reactome wont load! Can we find out why not? I changed the file extension so github issue tracker can attach it.
391160.sbgn.txt

[metincansiper]

The reason why it cannot be loaded is that the class of some nodes in this file is "annotation" which is not handled in sbgnviz.

[ugurdogrusoz]

Can we change our reader to "skip" such unrecognized classes?

[metincansiper]

Is skipping these classes means that when an element has one of these classes drawing it as a normal element(an element with no specific sbgnclass)?

[ugurdogrusoz]

Can't we just "ignore" them? "annotation" must be inside a glyph or arch, a property of a node or an edge that SBGNViz would not understand or care about. We should just skip such unrecognized elements.

[cannin]

Can you draw them as shown below? I think there are several glyphs that I do not think you are supporting. Ideally, you'd have them all, but in the meantime, can you put a simple placeholder, so that people at least know something was there and what it was supposed to be?

[ugurdogrusoz]

I am confused Augustin. Are these "annotation"s actually units of information?

[cannin]

The proposed solution is a hack. While I think SBGNViz should support all the SBGN glyphs, I understand there can be resource limitations in implementing everything. I would rather see a default visualization of an unknown glyph instead of it disappearing from the diagram completely. The suggested rectangle would hopefully be a very simple way of doing the default representation of an unknown glyph.

[metincansiper]

Just ignored the unrecognized classes at least for now.

[selimfirat]

This issue was moved to iVis-at-Bilkent/chise.js#4