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Introduction to Calcium Imaging Analysis with Python and CaImAn

Day 1: 2.00pm to 5.00pm

Session 1: Basic image processing with Numpy and Python
Session 2: TIFF and OME data
Session +: Installation help

Day 2: 9:30am to 5:00pm

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Session 1: Caiman movie handling tool and making summary images
Session 2: Motion correction with caiman
Session 3: Motion correction quality metrics
Session 4: Talk by Eric Thomson

Day 3: 9:30am to 5:00pm

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  1. Source extraction 2p
  2. Source extraction 1p
  3. Component evaluation

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