WGNEPS

Introduction

This is the code repository for The Working Group on Nephrops Surveys (WGNEPS), which is the international coordination group for Nephrops UWTV and trawl surveys within ICES. For underwater television surveys (UWTV), this group builds on the work of WKNEPHTV 2007, WKNEPHBID 2010, SGNEPS 2009, 2010 & 2012, WKNEPH 2009 and WKNEPS 2016 & 2018.

This repository includes input files, R scripts and additional functions needed to run the code. This repository does not include output files, as stated in .gitignore. However, output files could be uploaded in the future.

Contents of this repository

There are four main folders in this repo (A, B, C, D)

• Agreed common code for all the institutes:

  • A - Code for developing a reference set (WKNEPS 2018)

• All international institutes are invited to share their code under the following folders:

  • B - Code for running Lin's CCC test: pre-survey, training of Counters vs. Reference set counts

    • Marine Institute (Ireland)

  • C - Code for running Lin's CCC test: during survey, to compare Counters vs. Counters

    • Marine Institute (Ireland)

  • D - Code for plotting survey data

    • Marine Institute (Ireland)

Details

A - Code for developing a reference set (WKNEPS 2018)

The code follows this flowchart decision tree created in WKNEPS 2018: