GitHub - icnn/RNAseq-PIPELINE: Contains scripts to run the entire RNAseq analyses

icnn / RNAseq-PIPELINE Public

Contains scripts to run the entire RNAseq analyses

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Name		Name	Last commit message	Last commit date
Latest commit History 18 Commits
GATK		GATK
PIPELINE/RNA-seq		PIPELINE/RNA-seq
QC		QC
bin		bin
README_qsub_STAR		README_qsub_STAR
Random1mQC.sh		Random1mQC.sh
RunPicardScripts_test.sh		RunPicardScripts_test.sh
STAR_2path.sh		STAR_2path.sh
fastQC.R		fastQC.R
fastqQcOut.py		fastqQcOut.py
getCountsHTSeq_revstranded.sh		getCountsHTSeq_revstranded.sh
getRandomFastq.py		getRandomFastq.py
qsub_STAR.sh		qsub_STAR.sh
qsub_picard_scripts_test.sh		qsub_picard_scripts_test.sh
rnaseq_qsub_STAR.sh		rnaseq_qsub_STAR.sh
sam2bam.sh		sam2bam.sh
starSummary.R		starSummary.R