Merge pull request #1 from SPECFEM/devel

Devel

.azure-pipelines.yml

@@ -72,7 +72,7 @@ jobs:
           # tests/ directory
           RUN_CHECKS=1
         elif [ "$directory" == .azure-pipelines ]; then
-          # .travis/ directory
+          # azure directory
           RUN_CHECKS=1
         fi
       done <<< "$DIFF"
@@ -84,7 +84,8 @@ jobs:
     displayName: 'Run checks'
 
 - job: compilation_default
-  displayName: 'Compilation Default GCC 9'
+  # ubuntu-latest: ubuntu-22.04 w/ GCC 11
+  displayName: 'Compilation Default GCC'
   steps:
   - template: .azure-pipelines/install-template.yml
     parameters:
@@ -95,14 +96,14 @@ jobs:
       CUDA: false
       BUILD: true
 
-- job: compilation_default_gcc7
-  displayName: 'Compilation Default GCC 7'
+- job: compilation_default_gcc9
+  displayName: 'Compilation Default GCC 9'
   pool:
-    vmImage: 'ubuntu-18.04'
+    vmImage: 'ubuntu-20.04'
   variables:
-    CC: gcc-7
-    CXX: g++-7
-    FC: gfortran-7
+    CC: gcc-9
+    CXX: g++-9
+    FC: gfortran-9
   steps:
   - template: .azure-pipelines/install-template.yml
     parameters:
@@ -131,27 +132,33 @@ jobs:
       CUDA: false
       BUILD: true
 
-- job: compilation_CUDA10
-  displayName: 'Compilation CUDA 10'
+- job: compilation_CUDA11_gcc9
+  displayName: 'Compilation CUDA 11 GCC 9'
   pool:
-    vmImage: 'ubuntu-18.04'
+    vmImage: 'ubuntu-20.04'
   variables:
-    CC: gcc-7
-    CXX: g++-7
-    FC: gfortran-7
+    CC: gcc-9
+    CXX: g++-9
+    FC: gfortran-9
   steps:
   - template: .azure-pipelines/install-template.yml
     parameters:
       CUDA: true
-      CUDA_V: '10.2'
+      CUDA_V: '11.4'
   - template: .azure-pipelines/configure-template.yml
     parameters:
       TESTFLAGS: '--enable-vectorization --with-cuda=cuda10'
       CUDA: true
       BUILD: true
 
-- job: compilation_CUDA11
-  displayName: 'Compilation CUDA 11'
+- job: compilation_CUDA11_gcc10
+  displayName: 'Compilation CUDA 11 GCC 10'
+  pool:
+    vmImage: 'ubuntu-20.04'
+  variables:
+    CC: gcc-10
+    CXX: g++-10
+    FC: gfortran-10
   steps:
   - template: .azure-pipelines/install-template.yml
     parameters:
@@ -163,6 +170,38 @@ jobs:
       CUDA: true
       BUILD: true
 
+- job: compilation_CUDA12
+  displayName: 'Compilation CUDA 12 GCC 10'
+  pool:
+    vmImage: 'ubuntu-20.04'
+  variables:
+    CC: gcc-10
+    CXX: g++-10
+    FC: gfortran-10
+  steps:
+  - template: .azure-pipelines/install-template.yml
+    parameters:
+      CUDA: true
+      CUDA_V: '12.1'
+  - template: .azure-pipelines/configure-template.yml
+    parameters:
+      TESTFLAGS: '--enable-vectorization --with-cuda=cuda11'
+      CUDA: true
+      BUILD: true
+
+- job: compilation_CUDA12_latest
+  displayName: 'Compilation CUDA 12'
+  steps:
+  - template: .azure-pipelines/install-template.yml
+    parameters:
+      CUDA: true
+      CUDA_V: '12.1'
+  - template: .azure-pipelines/configure-template.yml
+    parameters:
+      TESTFLAGS: '--enable-vectorization --with-cuda=cuda12'
+      CUDA: true
+      BUILD: true
+
 - job: test_example_1
   displayName: 'Test example 1 - regional_Greece_small'
   dependsOn: compilation_default

.azure-pipelines/install-template.yml

@@ -4,8 +4,10 @@
 # software setup on VM nodes
 # ubuntu-18.04:
 # https://github.com/actions/virtual-environments/blob/main/images/linux/Ubuntu1804-README.md
-# ubuntu-20.04 "ubuntu-latest":
+# ubuntu-20.04:
 # https://github.com/actions/virtual-environments/blob/main/images/linux/Ubuntu2004-README.md
+# ubuntu-22.04 "ubuntu-latest":
+# https://github.com/actions/runner-images/blob/main/images/linux/Ubuntu2204-Readme.md
 #
 parameters:
 - name: CUDA
@@ -20,10 +22,27 @@ steps:
     # fortran/openMPI compiler
     echo "CC: ${CC} CXX: ${CXX} FC: ${FC}"
     # updates repository
+    echo; echo `uname -a`; lsb_release -a; echo
     sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys 6B05F25D762E3157
     sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys 78BD65473CB3BD13
     sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys 762E3157
-    if [ "${FC}" == "gfortran-10" ]; then
+    if [ "${FC}" == "gfortran-9" ]; then
+      echo "gfortran: gfortran-9 update"
+      # updating gfortran version
+      sudo add-apt-repository ppa:ubuntu-toolchain-r/test
+      sudo apt-get update
+      sudo apt-get install -y --reinstall gcc-9 g++-9 gfortran-9
+      # updates alternatives
+      echo
+      update-alternatives --query gfortran
+      echo
+      sudo update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-9 100
+      sudo update-alternatives --install /usr/bin/g++ g++ /usr/bin/g++-9 100
+      sudo update-alternatives --install /usr/bin/gfortran gfortran /usr/bin/gfortran-9 100
+      echo
+      update-alternatives --query gfortran
+      echo
+    elif [ "${FC}" == "gfortran-10" ]; then
       echo "gfortran: gfortran-10 update"
       # updating gfortran version
       sudo add-apt-repository ppa:ubuntu-toolchain-r/test
@@ -94,9 +113,14 @@ steps:
       ## distribution xenial: from ubuntu 16.04
       #UBUNTU_VERSION=ubuntu1604
       ## distribution bionic: from ubuntu 18.04
-      UBUNTU_VERSION=ubuntu1804
+      #UBUNTU_VERSION=ubuntu1804
       ## distribution focal: from ubuntu 20.04
       #UBUNTU_VERSION=ubuntu2004
+      ## distribution jammy: from ubuntu 22.04
+      #UBUNTU_VERSION=ubuntu2204
+
+      # default
+      UBUNTU_VERSION=ubuntu2004
 
       # CUDA_VERSION - specifies CUDA toolkit version
       echo "CUDA version: $CUDA_V"
@@ -110,10 +134,20 @@ steps:
       elif [ "$CUDA_V" == "10.2" ]; then
         ## bionic
         CUDA_VERSION=10.2.89-1
+      elif [ "$CUDA_V" == "11.4" ]; then
+        ## focal
+        CUDA_VERSION=11.4.0-1
+      elif [ "$CUDA_V" == "12.1" ]; then
+        ## focal
+        CUDA_VERSION=12.1.1-1
       else
-        # note: on azure VM nodes with ubuntu-latest, default gcc version is 9.3;
+        # note: - on azure VM nodes with ubuntu 18.04, default gcc version is 9.3;
+        #       needs at least CUDA version 10.x
+        #       - on azure VM nodes with ubuntu 20.04, default gcc version is 10.3;
         #       needs at least CUDA version 11.x
-        CUDA_VERSION=11.4.0-1
+        #       - on azure VM nodes with ubuntu-latest (22.04), default gcc version is 11.3;
+        #       needs at least CUDA version 11.7
+        CUDA_VERSION=12.1.1-1
       fi
       echo
 
@@ -151,7 +185,12 @@ steps:
       echo
 
       # gets repo
-      if [ "${CUDA_VERSION}" == "11.4.0-1" ]; then
+      if [ "${CUDA_VERSION}" == "10.2.89-1" ]; then
+        # gets packages
+        INSTALLER=cuda-repo-${UBUNTU_VERSION}_${CUDA_VERSION}_${CUDA_ARCH}.deb
+        wget http://developer.download.nvidia.com/compute/cuda/repos/${UBUNTU_VERSION}/${CUDA_OS}/${INSTALLER}
+        sudo dpkg -i ${INSTALLER}
+      elif [ "${CUDA_VERSION}" == "11.4.0-1" ]; then
         # new CUDA version 11.4 has no cuda-repo-** file, following instructions from website,
         # see: https://developer.nvidia.com/cuda-downloads?target_os=Linux&target_arch=x86_64&Distribution=Ubuntu&target_version=18.04&target_type=deb_network
         wget https://developer.download.nvidia.com/compute/cuda/repos/${UBUNTU_VERSION}/${CUDA_OS}/cuda-${UBUNTU_VERSION}.pin
@@ -160,10 +199,12 @@ steps:
         # adds repo
         sudo add-apt-repository "deb https://developer.download.nvidia.com/compute/cuda/repos/${UBUNTU_VERSION}/${CUDA_OS}/ /"
       else
-        # gets packages
-        INSTALLER=cuda-repo-${UBUNTU_VERSION}_${CUDA_VERSION}_${CUDA_ARCH}.deb
-        wget http://developer.download.nvidia.com/compute/cuda/repos/${UBUNTU_VERSION}/${CUDA_OS}/${INSTALLER}
-        sudo dpkg -i ${INSTALLER}
+        # new versions
+        wget https://developer.download.nvidia.com/compute/cuda/repos/${UBUNTU_VERSION}/${CUDA_OS}/cuda-${UBUNTU_VERSION}.pin
+        sudo mv cuda-${UBUNTU_VERSION}.pin /etc/apt/preferences.d/cuda-repository-pin-600
+        echo
+        # adds repo
+        sudo add-apt-repository "deb https://developer.download.nvidia.com/compute/cuda/repos/${UBUNTU_VERSION}/${CUDA_OS}/ /"
       fi
       #echo
 

.github/ISSUE_TEMPLATE/BUG-REPORT.yml

@@ -0,0 +1,74 @@
+name: "🐛 Bug Report"
+description: Create a new ticket for a bug.
+title: "🐛 [BUG] - <title>"
+labels: [
+  "bug"
+]
+body:
+  - type: textarea
+    id: description
+    attributes:
+      label: "Description"
+      description: Please enter an explicit description of your issue
+      placeholder: Short and explicit description of your incident...
+    validations:
+      required: true
+  - type: input
+    id: software-version
+    attributes:
+      label: "Affected SPECFEM3D_GLOBE version"
+      description: Please specify the exact version(s) of SPECFEM3D_GLBE you use (version number, git commit id, or latest development version)
+      placeholder: 
+    validations:
+      required: true
+  - type: input
+    id: environment
+    attributes:
+      label: "Your software and hardware environment"
+      description: Please specify the environment you are running SPECFEM3D_GLOBE in. In particular list your compiler (incl. version number), MPI (incl. version), and your hardware (laptop/desktop, cluster, gpu, etc.) 
+      placeholder: 
+    validations:
+      required: true
+  - type: textarea
+    id: reprod
+    attributes:
+      label: "Reproduction steps"
+      description: Please enter all the steps you did, so we can reproduce the issue
+      value: |
+        1. Go to '...'
+        2. Change settings '....'
+        3. Use data files '....'
+        4. See error
+      render: bash
+    validations:
+      required: true
+  - type: textarea
+    id: screenshot
+    attributes:
+      label: "Screenshots"
+      description: If applicable, add screenshots to help explain your problem.
+      value: |
+        ![DESCRIPTION](LINK.png)
+      render: bash
+    validations:
+      required: false
+  - type: textarea
+    id: logs
+    attributes:
+      label: "Logs"
+      description: Please copy and paste any relevant log output in particular  the full error message (including your input). This will be automatically formatted into code, so no need for backticks.
+      render: bash
+    validations:
+      required: false
+  - type: dropdown
+    id: os
+    attributes:
+      label: "OS"
+      description: What is the impacted environment ?
+      multiple: true
+      options:
+        - Windows
+        - Linux
+        - Mac
+    validations:
+      required: false