Error with latest moose

[srinath-chakravarthy]

All,
I just updated moose to the latest master branch. I also updated libmesh, but i get the following error. I also tried with the next branch, but i still get the same error:

In file included from /home/srinath/github/moose_latest/framework/build/header_symlinks/AugmentSparsityOnInterface.h:14,
                 from /home/srinath/github/moose_latest/framework/src/relationshipmanagers/AugmentSparsityOnInterface.C:11,
                 from /home/srinath/github/moose_latest/framework/build/unity_src/relationshipmanagers_Unity.C:2:
/home/srinath/github/moose_latest/framework/build/header_symlinks/RelationshipManager.h: In member function ‘void RelationshipManager::init(const libMesh::MeshBase&)’:
/home/srinath/github/moose_latest/framework/build/header_symlinks/RelationshipManager.h:48:7: error: ‘set_mesh’ was not declared in this scope
   48 |       set_mesh(&mesh);
      |       ^~~~~~~~
In file included from /home/srinath/github/moose_latest/framework/src/relationshipmanagers/AugmentSparsityOnInterface.C:11,
                 from /home/srinath/github/moose_latest/framework/build/unity_src/relationshipmanagers_Unity.C:2:
/home/srinath/github/moose_latest/framework/build/header_symlinks/AugmentSparsityOnInterface.h: At global scope:
/home/srinath/github/moose_latest/framework/build/header_symlinks/AugmentSparsityOnInterface.h:53:44: error: ‘virtual std::unique_ptr<libMesh::GhostingFunctor> AugmentSparsityOnInterface::clone() const’ marked ‘override’, but does not override
   53 |   virtual std::unique_ptr<GhostingFunctor> clone() const override
      |                                            ^~~~~
In file included from /home/srinath/github/moose_latest/framework/build/unity_src/relationshipmanagers_Unity.C:2:
/home/srinath/github/moose_latest/framework/src/relationshipmanagers/AugmentSparsityOnInterface.C: In member function ‘virtual void AugmentSparsityOnInterface::operator()(const libMesh::MeshBase::const_element_iterator&, const libMesh::MeshBase::const_element_iterator&, libMesh::processor_id_type, libMesh::GhostingFunctor::map_type&)’:
/home/srinath/github/moose_latest/framework/src/relationshipmanagers/AugmentSparsityOnInterface.C:134:36: error: ‘_mesh’ was not declared in this scope
  134 |     for (const Elem * const elem : _mesh->active_element_ptr_range())
      |                                    ^~~~~
/home/srinath/github/moose_latest/framework/src/relationshipmanagers/AugmentSparsityOnInterface.C:211:37: error: ‘_mesh’ was not declared in this scope
  211 |         const Elem * coupled_elem = _mesh->elem_ptr(coupled_elem_id);
      |                                     ^~~~~
In file included from /home/srinath/github/moose_latest/framework/build/header_symlinks/ElementPointNeighborLayers.h:12,
                 from /home/srinath/github/moose_latest/framework/src/relationshipmanagers/ElementPointNeighborLayers.C:10,
                 from /home/srinath/github/moose_latest/framework/build/unity_src/relationshipmanagers_Unity.C:3:
/home/srinath/github/moose_latest/framework/build/header_symlinks/FunctorRelationshipManager.h: At global scope:
/home/srinath/github/moose_latest/framework/build/header_symlinks/FunctorRelationshipManager.h:54:16: error: ‘virtual void FunctorRelationshipManager::set_mesh(const libMesh::MeshBase*)’ marked ‘override’, but does not override
   54 |   virtual void set_mesh(const MeshBase * mesh) override
      |                ^~~~~~~~
/home/srinath/github/moose_latest/framework/build/header_symlinks/FunctorRelationshipManager.h: In member function ‘virtual void FunctorRelationshipManager::set_mesh(const libMesh::MeshBase*)’:
/home/srinath/github/moose_latest/framework/build/header_symlinks/FunctorRelationshipManager.h:58:17: error: ‘class libMesh::GhostingFunctor’ has no member named ‘set_mesh’
   58 |       _functor->set_mesh(mesh);
      |                 ^~~~~~~~
/home/srinath/github/moose_latest/framework/build/header_symlinks/FunctorRelationshipManager.h:59:7: error: ‘_mesh’ was not declared in this scope; did you mean ‘mesh’?
   59 |       _mesh = mesh;
      |       ^~~~~
      |       mesh
In file included from /home/srinath/github/moose_latest/framework/src/relationshipmanagers/ElementPointNeighborLayers.C:10,
                 from /home/srinath/github/moose_latest/framework/build/unity_src/relationshipmanagers_Unity.C:3:
/home/srinath/github/moose_latest/framework/build/header_symlinks/ElementPointNeighborLayers.h: At global scope:
/home/srinath/github/moose_latest/framework/build/header_symlinks/ElementPointNeighborLayers.h:43:44: error: ‘virtual std::unique_ptr<libMesh::GhostingFunctor> ElementPointNeighborLayers::clone() const’ marked ‘override’, but does not override
   43 |   virtual std::unique_ptr<GhostingFunctor> clone() const override;
      |                                            ^~~~~
In file included from /home/srinath/github/moose_latest/framework/src/relationshipmanagers/ElementSideNeighborLayers.C:10,
                 from /home/srinath/github/moose_latest/framework/build/unity_src/relationshipmanagers_Unity.C:4:
/home/srinath/github/moose_latest/framework/build/header_symlinks/ElementSideNeighborLayers.h:42:44: error: ‘virtual std::unique_ptr<libMesh::GhostingFunctor> ElementSideNeighborLayers::clone() const’ marked ‘override’, but does not override
   42 |   virtual std::unique_ptr<GhostingFunctor> clone() const override;
      |                                            ^~~~~
In file included from /home/srinath/github/moose_latest/framework/build/unity_src/relationshipmanagers_Unity.C:5:
/home/srinath/github/moose_latest/framework/src/relationshipmanagers/FunctorRelationshipManager.C: In copy constructor ‘FunctorRelationshipManager::FunctorRelationshipManager(const FunctorRelationshipManager&)’:
/home/srinath/github/moose_latest/framework/src/relationshipmanagers/FunctorRelationshipManager.C:28:75: error: ‘class libMesh::GhostingFunctor’ has no member named ‘clone’
   28 |   : RelationshipManager(other), _functor(other._functor ? other._functor->clone() : nullptr)
      |                                                                           ^~~~~
In file included from /home/srinath/github/moose_latest/framework/src/relationshipmanagers/MooseGhostPointNeighbors.C:10,
                 from /home/srinath/github/moose_latest/framework/build/unity_src/relationshipmanagers_Unity.C:6:
/home/srinath/github/moose_latest/framework/build/header_symlinks/MooseGhostPointNeighbors.h: At global scope:
/home/srinath/github/moose_latest/framework/build/header_symlinks/MooseGhostPointNeighbors.h:41:44: error: ‘virtual std::unique_ptr<libMesh::GhostingFunctor> MooseGhostPointNeighbors::clone() const’ marked ‘override’, but does not override
   41 |   virtual std::unique_ptr<GhostingFunctor> clone() const override;
      |                                            ^~~~~
In file included from /home/srinath/github/moose_latest/framework/src/relationshipmanagers/ProxyRelationshipManager.C:10,
                 from /home/srinath/github/moose_latest/framework/build/unity_src/relationshipmanagers_Unity.C:7:
/home/srinath/github/moose_latest/framework/build/header_symlinks/ProxyRelationshipManager.h:53:44: error: ‘virtual std::unique_ptr<libMesh::GhostingFunctor> ProxyRelationshipManager::clone() const’ marked ‘override’, but does not override
   53 |   virtual std::unique_ptr<GhostingFunctor> clone() const override
      |                                            ^~~~~

Any help is appreciated.

Cheers
Srinath

[srinath-chakravarthy]

The above problem was solved by using the "next" branch. The master branch still fails, even after git clean -xfd

[dschwen]

What libMesh version are you using?

[srinath-chakravarthy]

Not sure what libmesh version it is. I do not use conda, so all of this is manually installed. In either (master/next) branch i did git submodule update --init --recursive, followed by ./scripts/update_and_rebuild_libmesh. In my app directory, i did make clobberall followed by make -j 24.

Cheers
Srinath

[GiudGiud]

You can get the latest libmesh commit with git log -n 1 [branch_name] ran in the libmesh directory

[srinath-chakravarthy]

Sorry for the delayed response. These are the libmesh versions on each branch
Master branch : 9006cd06b6a4d
Next branch : 4f3fa5a6a