INSTALL MOOSE IN WSL

[ljeft]

I installed moose in wsl for download and had the same problem when building PETSc.This is a problem I have not encountered before installing moose, I do not know how to solve it.

/home/sohar/projects/moose/scripts
INFO: Checking for HDF5...
INFO: HDF5 library not detected, opting to download via PETSc...
=============================================================================================
                         Configuring PETSc to compile on your system
=============================================================================================
=============================================================================================
                                     ***** WARNING *****
  Found environment variable: CC=mpicc. Ignoring it! Use "./configure CC=$CC" if you really
  want to use this value
=============================================================================================
=============================================================================================
                                     ***** WARNING *****
  Found environment variable: CXX=mpicxx. Ignoring it! Use "./configure CXX=$CXX" if you
  really want to use this value
=============================================================================================
=============================================================================================
                                     ***** WARNING *****
  Found environment variable: FC=mpif90. Ignoring it! Use "./configure FC=$FC" if you
  really want to use this value
=============================================================================================
=============================================================================================
                                     ***** WARNING *****
  Found environment variable: F77=mpif77. Ignoring it! Use "./configure F77=$F77" if you
  really want to use this value
=============================================================================================
=============================================================================================
                                     ***** WARNING *****
  Found environment variable: F90=mpif90. Ignoring it! Use "./configure F90=$F90" if you
  really want to use this value
=============================================================================================
=============================================================================================
                                     ***** WARNING *****
  Using default C optimization flags "-g -O". You might consider manually setting optimal
  optimization flags for your system with COPTFLAGS="optimization flags" see
  config/examples/arch-*-opt.py for examples
=============================================================================================
=============================================================================================
                                     ***** WARNING *****
  Using default Cxx optimization flags "-g -O". You might consider manually setting optimal
  optimization flags for your system with CXXOPTFLAGS="optimization flags" see
  config/examples/arch-*-opt.py for examples
=============================================================================================
=============================================================================================
                                     ***** WARNING *****
  Using default CUDA optimization flags "-O3". You might consider manually setting optimal
  optimization flags for your system with CUDAOPTFLAGS="optimization flags" see
  config/examples/arch-*-opt.py for examples
=============================================================================================
=============================================================================================
  Trying to download
  https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.12/hdf5-1.12.2/src/hdf5-1.12.2.tar.bz2
  for HDF5
=============================================================================================
=============================================================================================
                   Running configure on HDF5; this may take several minutes
=============================================================================================
=============================================================================================
                     Running make on HDF5; this may take several minutes
=============================================================================================
=============================================================================================
                 Running make install on HDF5; this may take several minutes
=============================================================================================
TESTING: consistencyChecks from config.packages.fblaslapack(config/BuildSystem/config/package.py:1095)
*********************************************************************************************
           UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
---------------------------------------------------------------------------------------------
        Cannot use fblaslapack without Fortran, make sure you do NOT have --with-fc=0
*********************************************************************************************

this my diagnostics script

Mon Jan 29 21:29:55 CST 2024
No LSB modules are available.

System Arch: Distributor ID: Ubuntu Description: Ubuntu 22.04.3 LTS Release: 22.04 Codename: jammy

MOOSE Package Version: Custom Build

CPU Count: 28

Memory Free: 6164.730 MB

Variable `which $CC` check:
/usr/local/openmpi-4.1.6/bin/mpicc

$CC --version:
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
Copyright (C) 2021 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

MPICC:
which mpicc:
        /usr/local/openmpi-4.1.6/bin/mpicc
mpicc -show:
        gcc -I/usr/local/openmpi-4.1.6/include -L/usr/local/openmpi-4.1.6/lib -Wl,-rpath -Wl,/usr/local/openmpi-4.1.6/lib -Wl,--enable-new-dtags -lmpi

COMPILER gcc:
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
Copyright (C) 2021 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

Python: NO PYTHON DETECTED

MODULES NOT AVAILABLE

PETSC_DIR not set

ENVIRONMENT:
CC=mpicc
CUDA_HOME=:/usr/local/cuda-11.8
CXX=mpicxx
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/1000/bus
DISPLAY=:0
F77=mpif77
F90=mpif90
FC=mpif90
HOME=/home/sohar
HOSTTYPE=x86_64
LANG=C.UTF-8
LD_LIBRARY_PATH=:/usr/local/cuda-11.8/lib64
LESSCLOSE=/usr/bin/lesspipe %s %s
LESSOPEN=| /usr/bin/lesspipe %s
LOGNAME=sohar
LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36:
METHODS=opt
MOOSE_JOBS=6
NAME=DESKTOP-RPC0OMG
OLDPWD=/home/sohar
PATH=/usr/local/openmpi-4.1.6/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/usr/lib/wsl/lib:/mnt/c/Program Files/WindowsApps/CanonicalGroupLimited.Ubuntu22.04LTS_2204.3.63.0_x64__79rhkp1fndgsc:/mnt/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v11.8/bin:/mnt/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v11.8/libnvvp:/mnt/c/Windows/system32:/mnt/c/Windows:/mnt/c/Windows/System32/Wbem:/mnt/c/Windows/System32/WindowsPowerShell/v1.0/:/mnt/c/Windows/System32/OpenSSH/:/mnt/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common:/mnt/c/Program Files/NVIDIA Corporation/NVIDIA NvDLISR:/mnt/c/Program Files/Microsoft SQL Server/150/Tools/Binn/:/mnt/c/Program Files/Microsoft SQL Server/Client SDK/ODBC/170/Tools/Binn/:/mnt/e/Windows Kits/10/Windows Performance Toolkit/:/mnt/c/Program Files/NVIDIA Corporation/Nsight Compute 2022.3.0/:/mnt/e/Git/cmd:/mnt/c/Users/DZKD/AppData/Local/Microsoft/WindowsApps:/mnt/d/Users/DZKD/AppData/Local/Programs/Microsoft VS Code/bin:/snap/bin:/usr/local/cuda-11.8/bin
PULSE_SERVER=unix:/mnt/wslg/PulseServer
PWD=/home/sohar/projects/moose/scripts
SHELL=/bin/bash
SHLVL=1
TERM=xterm-256color
USER=sohar
WAYLAND_DISPLAY=wayland-0
WSL2_GUI_APPS_ENABLED=1
WSLENV=
WSL_DISTRO_NAME=Ubuntu-22.04
WSL_INTEROP=/run/WSL/656_interop
XDG_DATA_DIRS=/usr/local/share:/usr/share:/var/lib/snapd/desktop
XDG_RUNTIME_DIR=/run/user/1000/
_=/usr/bin/env

[milljm]

What is the error?

[GiudGiud]

You need a fortran compiler.
It seems while the F90, FC, F77 environment variables are set, there's not a working fortran compiler there

[milljm]

hmmm... this should have said FAIL instead of OK

F90 version:	

OK

##################################################################################################
Python Sanity Checks

Edit:
Oh I see why it didn't fail. I am checking on the presence of the variable being set. Not actually checking if the variable is pointing to a working binary.

[ljeft]

I've downloaded fortran

sohar@sohar-vm:~/projects/moose/scripts$ gfortran -v
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/11/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 11.4.0-1ubuntu1~22.04' --with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-11 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-11-XeT9lY/gcc-11-11.4.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-XeT9lY/gcc-11-11.4.0/debian/tmp-gcn/usr --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=2
Thread model: posix
Supported LTO compression algorithms: zlib zstd
gcc version 11.4.0 (Ubuntu 11.4.0-1ubuntu1~22.04) 

[GiudGiud]

Set FC F90 and F77 pointing to it (and mpi version of it, so downloading gfortran s probably not enough) and try installing petsc again

[ljeft]

you mean export CC=mpicc CXX=mpicxx FC=mpif90 F90=mpif90 F77=mpif77,But it's still the error.

[ljeft]

This is a Chinese video without subtitles, so it may be difficult to understand
https://www.bilibili.com/video/BV1LA411K7Pe/?spm_id_from=333.337.search-card.all.click