examples/New_wrapper_api_sample.ipynb

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 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Introduction to _py2cytoscape_: Pythonista-friendly wrapper for cyREST\n",
    "\n",
    "![](http://cl.ly/XohP/logo300.png)\n",
    "\n",
    "<h1 align=\"center\">For</h1> \n",
    "\n",
    "![](https://www.python.org/static/community_logos/python-logo-master-v3-TM.png)\n",
    "\n",
    "by [Keiichiro Ono](http://keiono.github.io/) - University of California, San Diego [Trey Ideker Lab](http://healthsciences.ucsd.edu/som/medicine/research/labs/ideker/Pages/default.aspx)\n",
    "\n",
    "## Requirments\n",
    "* Java 8\n",
    "* Cytoscape 3.2.1+\n",
    "* cyREST 1.1.0+\n",
    "* py2cytoscape 0.4.2+\n",
    "\n",
    "----\n",
    "\n",
    "## Q. What is _py2cytoscape_?\n",
    "## A. A Python package to drive Cytoscape in pythonic way"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# In a Nutshell..."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "application/javascript": [
       "if (window['cytoscape'] === undefined) {\n",
       "    var paths = {\n",
       "        cytoscape: 'http://cytoscape.github.io/cytoscape.js/api/cytoscape.js-latest/cytoscape.min'\n",
       "    };\n",
       "\n",
       "    require.config({\n",
       "        paths: paths\n",
       "    });\n",
       "\n",
       "    require(['cytoscape'], function (cytoscape) {\n",
       "        console.log('Loading Cytoscape.js Module...');\n",
       "        window['cytoscape'] = cytoscape;\n",
       "\n",
       "        var event = document.createEvent(\"HTMLEvents\");\n",
       "        event.initEvent(\"load_cytoscape\", true, false);\n",
       "        window.dispatchEvent(event);\n",
       "    });\n",
       "}"
      ],
      "text/plain": [
       "<IPython.core.display.Javascript object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "from py2cytoscape.data.cynetwork import CyNetwork\n",
    "from py2cytoscape.data.cyrest_client import CyRestClient\n",
    "from py2cytoscape.data.style import StyleUtil\n",
    "import py2cytoscape.util.cytoscapejs as cyjs\n",
    "import py2cytoscape.cytoscapejs as renderer\n",
    "\n",
    "import networkx as nx\n",
    "import pandas as pd\n",
    "import json"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>alias</th>\n",
       "      <th>annotation.DB_Object_Name</th>\n",
       "      <th>annotation.GO BIOLOGICAL_PROCESS</th>\n",
       "      <th>annotation.GO CELLULAR_COMPONENT</th>\n",
       "      <th>annotation.GO MOLECULAR_FUNCTION</th>\n",
       "      <th>label</th>\n",
       "      <th>kegg</th>\n",
       "      <th>uniprot</th>\n",
       "      <th>sgd</th>\n",
       "      <th>entrez</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>YAL003W</th>\n",
       "      <td>translation elongation factor EF-1beta, EF-1 b...</td>\n",
       "      <td>EF-1 beta, translation elongation factor EF-1beta</td>\n",
       "      <td>translational elongation</td>\n",
       "      <td>eukaryotic translation elongation factor 1 com...</td>\n",
       "      <td>translation elongation factor activity</td>\n",
       "      <td>EF1B</td>\n",
       "      <td>sce:YAL003W</td>\n",
       "      <td>EF1B_YEAST</td>\n",
       "      <td>S000000003</td>\n",
       "      <td>851260</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>YAL030W</th>\n",
       "      <td>S000000028, SNC1</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Golgi to plasma membrane transport, endocytosi...</td>\n",
       "      <td>Golgi trans face, SNARE complex, endosome, tra...</td>\n",
       "      <td>v-SNARE activity</td>\n",
       "      <td>SNC1</td>\n",
       "      <td>sce:YAL030W</td>\n",
       "      <td>SNC1_YEAST</td>\n",
       "      <td>S000000028</td>\n",
       "      <td>851203</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>YAL038W</th>\n",
       "      <td>CDC19, PYK1, S000000036, pyruvate kinase</td>\n",
       "      <td>pyruvate kinase</td>\n",
       "      <td>glycolysis, pyruvate metabolic process</td>\n",
       "      <td>cytosol</td>\n",
       "      <td>pyruvate kinase activity</td>\n",
       "      <td>KPYK1</td>\n",
       "      <td>sce:YAL038W</td>\n",
       "      <td>KPYK1_YEAST</td>\n",
       "      <td>S000000036</td>\n",
       "      <td>851193</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>YAL040C</th>\n",
       "      <td>CLN3, DAF1, FUN10, G1 cyclin, S000000038, WHI1</td>\n",
       "      <td>G1 cyclin</td>\n",
       "      <td>G1/S transition of mitotic cell cycle, regulat...</td>\n",
       "      <td>nucleus</td>\n",
       "      <td>cyclin-dependent protein kinase regulator acti...</td>\n",
       "      <td>CG13</td>\n",
       "      <td>sce:YAL040C</td>\n",
       "      <td>CG13_YEAST</td>\n",
       "      <td>S000000038</td>\n",
       "      <td>851191</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>YAR007C</th>\n",
       "      <td>heterotrimeric RPA (RF-A) single-stranded DNA ...</td>\n",
       "      <td>RF-A, heterotrimeric RPA (RF-A) single-strande...</td>\n",
       "      <td>DNA recombination, DNA replication, synthesis ...</td>\n",
       "      <td>DNA replication factor A complex, chromosome, ...</td>\n",
       "      <td>damaged DNA binding, single-stranded DNA binding</td>\n",
       "      <td>RFA1</td>\n",
       "      <td>sce:YAR007C</td>\n",
       "      <td>RFA1_YEAST</td>\n",
       "      <td>S000000065</td>\n",
       "      <td>851266</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "                                                     alias  \\\n",
       "YAL003W  translation elongation factor EF-1beta, EF-1 b...   \n",
       "YAL030W                                   S000000028, SNC1   \n",
       "YAL038W           CDC19, PYK1, S000000036, pyruvate kinase   \n",
       "YAL040C     CLN3, DAF1, FUN10, G1 cyclin, S000000038, WHI1   \n",
       "YAR007C  heterotrimeric RPA (RF-A) single-stranded DNA ...   \n",
       "\n",
       "                                 annotation.DB_Object_Name  \\\n",
       "YAL003W  EF-1 beta, translation elongation factor EF-1beta   \n",
       "YAL030W                                                NaN   \n",
       "YAL038W                                    pyruvate kinase   \n",
       "YAL040C                                          G1 cyclin   \n",
       "YAR007C  RF-A, heterotrimeric RPA (RF-A) single-strande...   \n",
       "\n",
       "                          annotation.GO BIOLOGICAL_PROCESS  \\\n",
       "YAL003W                           translational elongation   \n",
       "YAL030W  Golgi to plasma membrane transport, endocytosi...   \n",
       "YAL038W             glycolysis, pyruvate metabolic process   \n",
       "YAL040C  G1/S transition of mitotic cell cycle, regulat...   \n",
       "YAR007C  DNA recombination, DNA replication, synthesis ...   \n",
       "\n",
       "                          annotation.GO CELLULAR_COMPONENT  \\\n",
       "YAL003W  eukaryotic translation elongation factor 1 com...   \n",
       "YAL030W  Golgi trans face, SNARE complex, endosome, tra...   \n",
       "YAL038W                                            cytosol   \n",
       "YAL040C                                            nucleus   \n",
       "YAR007C  DNA replication factor A complex, chromosome, ...   \n",
       "\n",
       "                          annotation.GO MOLECULAR_FUNCTION  label  \\\n",
       "YAL003W             translation elongation factor activity   EF1B   \n",
       "YAL030W                                   v-SNARE activity   SNC1   \n",
       "YAL038W                           pyruvate kinase activity  KPYK1   \n",
       "YAL040C  cyclin-dependent protein kinase regulator acti...   CG13   \n",
       "YAR007C   damaged DNA binding, single-stranded DNA binding   RFA1   \n",
       "\n",
       "                kegg      uniprot         sgd  entrez  \n",
       "YAL003W  sce:YAL003W   EF1B_YEAST  S000000003  851260  \n",
       "YAL030W  sce:YAL030W   SNC1_YEAST  S000000028  851203  \n",
       "YAL038W  sce:YAL038W  KPYK1_YEAST  S000000036  851193  \n",
       "YAL040C  sce:YAL040C   CG13_YEAST  S000000038  851191  \n",
       "YAR007C  sce:YAR007C   RFA1_YEAST  S000000065  851266  "
      ]
     },
     "execution_count": 2,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "# !!!!!!!!!!!!!!!!! Step 0: Start Cytoscape 3 with cyREST App !!!!!!!!!!!!!!!!!!!!!!!!!!\n",
    "\n",
    "# Step 1: Create py2cytoscape client\n",
    "cy = CyRestClient()\n",
    "\n",
    "\n",
    "# Reset\n",
    "cy.session.delete()\n",
    "\n",
    "# Step 2: Load network from somewhere\n",
    "yeast_net = cy.network.create_from('../tests/data/galFiltered.sif')\n",
    "\n",
    "# Step 3: Load table as pandas' DataFrame\n",
    "table_data = pd.read_csv('sample_data_table.csv', index_col=0)\n",
    "table_data.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {
    "collapsed": false
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   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
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{'x': -1108.3316602615635, 'y': 1479.2108023762703}, 'selected': False, 'data': {'shared_name': 'YLR293C', 'SUID': 73083, 'selected': False, 'id': '73083', 'name': 'YLR293C'}}, {'position': {'x': -750.4819898514072, 'y': 1485.739076912403}, 'selected': False, 'data': {'shared_name': 'YBR118W', 'SUID': 73081, 'selected': False, 'id': '73081', 'name': 'YBR118W'}}, {'position': {'x': -844.6893567947666, 'y': 1479.2108023762703}, 'selected': False, 'data': {'shared_name': 'YPR080W', 'SUID': 73079, 'selected': False, 'id': '73079', 'name': 'YPR080W'}}, {'position': {'x': -841.7789106277744, 'y': 1573.6889441609383}, 'selected': False, 'data': {'shared_name': 'YLR249W', 'SUID': 73078, 'selected': False, 'id': '73078', 'name': 'YLR249W'}}, {'position': {'x': -1086.6374921707431, 'y': 1679.8470481038094}, 'selected': False, 'data': {'shared_name': 'YOR204W', 'SUID': 73076, 'selected': False, 'id': '73076', 'name': 'YOR204W'}}, {'position': {'x': -1052.5739393142978, 'y': 1575.1441519856453}, 'selected': False, 'data': {'shared_name': 'YGL097W', 'SUID': 73074, 'selected': False, 'id': '73074', 'name': 'YGL097W'}}, {'position': {'x': -944.6893567947666, 'y': 1597.2924368977547}, 'selected': False, 'data': {'shared_name': 'YGR218W', 'SUID': 73073, 'selected': False, 'id': '73073', 'name': 'YGR218W'}}, {'position': {'x': 1600.848393449374, 'y': 61.969042122364044}, 'selected': False, 'data': {'shared_name': 'YGL122C', 'SUID': 73071, 'selected': False, 'id': '73071', 'name': 'YGL122C'}}, {'position': {'x': 1707.5111131759365, 'y': 109.34636145830154}, 'selected': False, 'data': {'shared_name': 'YKR026C', 'SUID': 73070, 'selected': False, 'id': '73070', 'name': 'YKR026C'}}]}, 'target_cytoscapejs_version': '~2.1', 'format_version': '1.0', 'generated_by': 'cytoscape-3.4.0', 'data': {'selected': True, 'SUID': 73060, '__Annotations': [], 'source_location': 'file:////Users/kono/prog/git/py2cytoscape/tests/data/galFiltered.sif', 'name': 'galFiltered.sif', 'shared_name': 'galFiltered.sif'}}\n"
     ]
    }
   ],
   "source": [
    "all_suid = cy.network.get_all()\n",
    "net1 = cy.network.create(all_suid[0])\n",
    "print(net1.get_first_view())"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "# Step 4: Merge them in Cytoscape\n",
    "yeast_net.update_node_table(df=table_data, network_key_col='name')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "# Step 5: Apply layout\n",
    "cy.layout.apply(name='degree-circle', network=yeast_net)\n",
    "\n",
    "# Step 6: Create Visual Style as code (or by hand if you prefer)\n",
    "my_yeast_style = cy.style.create('GAL Style')\n",
    "\n",
    "\n",
    "basic_settings = {\n",
    "    \n",
    "    # You can set default values as key-value pairs.\n",
    "    \n",
    "    'NODE_FILL_COLOR': '#6AACB8',\n",
    "    'NODE_SIZE': 55,\n",
    "    'NODE_BORDER_WIDTH': 0,\n",
    "    'NODE_LABEL_COLOR': '#555555',\n",
    "    \n",
    "    'EDGE_WIDTH': 2,\n",
    "    'EDGE_TRANSPARENCY': 100,\n",
    "    'EDGE_STROKE_UNSELECTED_PAINT': '#333333',\n",
    "    \n",
    "    'NETWORK_BACKGROUND_PAINT': '#FFFFEA'\n",
    "}\n",
    "\n",
    "my_yeast_style.update_defaults(basic_settings)\n",
    "\n",
    "# Create some mappings\n",
    "my_yeast_style.create_passthrough_mapping(column='label', vp='NODE_LABEL', col_type='String')\n",
    "\n",
    "degrees = yeast_net.get_node_column('degree.layout') "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 14,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<!DOCTYPE html>\n",
       "<html>\n",
       "<head>\n",
       "    <meta charset=utf-8 />\n",
       "    <style type=\"text/css\">\n",
       "      body {\n",
       "          font: 14px helvetica neue, helvetica, arial, sans-serif;\n",
       "      }\n",
       "\n",
       "      #cy85c0acc1-64ba-456e-9895-2352066c6aed {\n",
       "        height: 700px;\n",
       "        width: 1098px;\n",
       "        position: absolute;\n",
       "        left: 4px;\n",
       "        top: 5px;\n",
       "        background: radial-gradient(#FFFFFF 15%, #DDDDDD 105%);\n",
       "      }\n",
       "    </style>\n",
       "\n",
       "    <script>\n",
       "    (function() {\n",
       "      function render() {\n",
       "        $('#cy85c0acc1-64ba-456e-9895-2352066c6aed').cytoscape({\n",
       "            elements: {\n",
       "                nodes: [{\"position\": {\"x\": 9.207989546603498, \"y\": 880.4047453851792}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851333.0, \"degree_layout\": 1, \"label\": \"SNF3\", \"uniprot\": \"SNF3_YEAST\", \"name\": \"YDL194W\", \"sgd\": \"S000002353\", \"annotation_DB_Object_Name\": \"glucose sensor\", \"alias\": \"S000002353, SNF3, glucose sensor\", \"annotation_GO_CELLULAR_COMPONENT\": \"plasma membrane\", \"SUID\": 73760, \"kegg\": \"sce:YDL194W\", \"shared_name\": \"YDL194W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"response to glucose stimulus, signal transduction\", \"annotation_GO_MOLECULAR_FUNCTION\": \"glucose binding, glucose transporter activity, receptor activity\", \"id\": \"73760\"}}, {\"position\": {\"x\": -1119.3482052367076, \"y\": -1394.498142372909}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851870.0, \"degree_layout\": 2, \"label\": \"MTH1\", \"uniprot\": \"MTH1_YEAST\", \"name\": \"YDR277C\", 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metabolic process, threonine metabolic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"aspartate kinase activity\", \"id\": \"73599\"}}, {\"position\": {\"x\": -1222.7348045022131, \"y\": -1192.5363243755075}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 850990.0, \"degree_layout\": 1, \"label\": \"ECI1\", \"uniprot\": \"ECI1_YEAST\", \"name\": \"YLR284C\", \"sgd\": \"S000004274\", \"annotation_DB_Object_Name\": \"d3,d2-Enoyl-CoA Isomerase\", \"alias\": \"ECI1, S000004274, d2-Enoyl-CoA Isomerase, d3\", \"annotation_GO_CELLULAR_COMPONENT\": \"peroxisome\", \"SUID\": 73596, \"kegg\": \"sce:YLR284C\", \"shared_name\": \"YLR284C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"fatty acid beta-oxidation\", \"annotation_GO_MOLECULAR_FUNCTION\": \"dodecenoyl-CoA delta-isomerase activity\", \"id\": \"73596\"}}, {\"position\": {\"x\": -1236.9429932707174, \"y\": -1157.4548084915743}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856605.0, \"degree_layout\": 1, \"label\": \"AIM18\", \"uniprot\": \"AIM18_YEAST\", \"name\": \"YHR198C\", \"sgd\": \"S000001241\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"S000001241\", \"annotation_GO_CELLULAR_COMPONENT\": \"mitochondrion\", \"SUID\": 73594, \"kegg\": \"sce:YHR198C\", \"shared_name\": \"YHR198C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"biological_process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"molecular_function\", \"id\": \"73594\"}}, {\"position\": {\"x\": 1269.9907766739386, \"y\": 397.3479079871966}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855836.0, \"degree_layout\": 3, \"label\": \"HSP82\", \"uniprot\": \"HSP82_YEAST\", \"name\": \"YPL240C\", \"sgd\": \"S000006161\", \"annotation_DB_Object_Name\": \"heat shock protein 90\", \"alias\": \"HSP82, HSP90, S000006161, heat shock protein 90\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm\", \"SUID\": 73590, \"kegg\": \"sce:YPL240C\", \"shared_name\": \"YPL240C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"'de novo' protein folding, proteasome assembly, protein refolding, response to osmotic stress, response to stress\", \"annotation_GO_MOLECULAR_FUNCTION\": \"ATPase activity, coupled, unfolded protein binding\", \"id\": \"73590\"}}, {\"position\": {\"x\": 516.4989491844732, \"y\": -2069.067646845283}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856217.0, \"degree_layout\": 2, \"label\": \"RL11A\", \"uniprot\": \"RL11A_YEAST\", \"name\": \"YPR102C\", \"sgd\": \"S000006306\", \"annotation_DB_Object_Name\": \"ribosomal protein L11A (L16A) (rp39A) (YL22)\", \"alias\": \"RPL11A, S000006306, ribosomal protein L11A (L16A) (rp39A) (YL22)\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytosolic large ribosomal subunit (sensu the Eukaryota research community)\", \"SUID\": 73587, \"kegg\": \"sce:YPR102C\", \"shared_name\": \"YPR102C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"ribosomal large subunit assembly and maintenance\", \"annotation_GO_MOLECULAR_FUNCTION\": \"structural constituent of ribosome\", \"id\": \"73587\"}}, {\"position\": {\"x\": 479.62131116760963, \"y\": -2077.5896888008997}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 850764.0, \"degree_layout\": 2, \"label\": \"RL10\", \"uniprot\": \"RL10_YEAST\", \"name\": \"YLR075W\", \"sgd\": \"S000004065\", \"annotation_DB_Object_Name\": \"ribosomal protein L10\", \"alias\": \"GRC5, QSR1, RPL10, S000004065, ribosomal protein L10\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytosolic large ribosomal subunit (sensu the Eukaryota research community)\", \"SUID\": 73586, \"kegg\": \"sce:YLR075W\", \"shared_name\": \"YLR075W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"ribosomal large subunit assembly and maintenance\", \"annotation_GO_MOLECULAR_FUNCTION\": \"structural constituent of ribosome\", \"id\": \"73586\"}}, {\"position\": {\"x\": -463.5518178097757, \"y\": 752.1295339244155}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 853696.0, \"degree_layout\": 1, \"label\": \"KDX1\", \"uniprot\": \"KDX1_YEAST\", \"name\": \"YKL161C\", \"sgd\": \"S000001644\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"MLP1, S000001644\", \"annotation_GO_CELLULAR_COMPONENT\": \"cellular_component\", \"SUID\": 73583, \"kegg\": \"sce:YKL161C\", \"shared_name\": \"YKL161C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"biological_process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"protein kinase activity\", \"id\": \"73583\"}}, {\"position\": {\"x\": 998.6193894606214, \"y\": -1855.8698897320826}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851266.0, \"degree_layout\": 2, \"label\": \"RFA1\", \"uniprot\": \"RFA1_YEAST\", \"name\": \"YAR007C\", \"sgd\": \"S000000065\", \"annotation_DB_Object_Name\": \"RF-A, heterotrimeric RPA (RF-A) single-stranded DNA binding protein 69 kDa subunit\", \"alias\": \"heterotrimeric RPA (RF-A) single-stranded DNA binding protein 69 kDa subunit, BUF2, FUN3, RF-A, RFA1, RPA1, S000000065\", \"annotation_GO_CELLULAR_COMPONENT\": \"DNA replication factor A complex, chromosome, telomeric region, cytoplasm, nucleus\", \"SUID\": 73580, \"kegg\": \"sce:YAR007C\", \"shared_name\": \"YAR007C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"DNA recombination, DNA replication, synthesis of RNA primer, DNA strand elongation during DNA replication, DNA unwinding during replication, double-strand break repair via homologous recombination, nucleotide-excision repair, postreplication repair\", \"annotation_GO_MOLECULAR_FUNCTION\": \"damaged DNA binding, single-stranded DNA binding\", \"id\": \"73580\"}}, {\"position\": {\"x\": -1339.617052932226, \"y\": 1123.728708217039}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854646.0, \"degree_layout\": 1, \"label\": \"THIK\", \"uniprot\": \"THIK_YEAST\", \"name\": \"YIL160C\", \"sgd\": \"S000001422\", \"annotation_DB_Object_Name\": \"3-oxoacyl CoA thiolase\", \"alias\": \"3-oxoacyl CoA thiolase, FOX3, POT1, POX3, S000001422\", \"annotation_GO_CELLULAR_COMPONENT\": \"peroxisomal matrix\", \"SUID\": 73567, \"kegg\": \"sce:YIL160C\", \"shared_name\": \"YIL160C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"fatty acid beta-oxidation\", \"annotation_GO_MOLECULAR_FUNCTION\": \"acetyl-CoA C-acyltransferase activity\", \"id\": \"73567\"}}, {\"position\": {\"x\": -1300.9977669894672, \"y\": 1292.9308553800486}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851481.0, \"degree_layout\": 1, \"label\": \"MDHP\", \"uniprot\": \"MDHP_YEAST\", \"name\": \"YDL078C\", \"sgd\": \"S000002236\", \"annotation_DB_Object_Name\": \"malate dehydrogenase\", \"alias\": \"MDH3, S000002236, malate dehydrogenase\", \"annotation_GO_CELLULAR_COMPONENT\": \"peroxisomal matrix, peroxisome\", \"SUID\": 73563, \"kegg\": \"sce:YDL078C\", \"shared_name\": \"YDL078C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"NADH regeneration, fatty acid beta-oxidation, glyoxylate cycle, malate metabolic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"L-malate dehydrogenase activity\", \"id\": \"73563\"}}, {\"position\": {\"x\": -949.6458880594968, \"y\": 1123.7287082170392}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851720.0, \"degree_layout\": 3, \"label\": \"PEX7\", \"uniprot\": \"PEX7_YEAST\", \"name\": \"YDR142C\", \"sgd\": \"S000002549\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"PAS7, PEB1, PEX7, S000002549\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytosol, peroxisomal matrix\", \"SUID\": 73561, \"kegg\": \"sce:YDR142C\", \"shared_name\": \"YDR142C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"peroxisome organization and biogenesis, protein targeting to peroxisome\", \"annotation_GO_MOLECULAR_FUNCTION\": \"peroxisome targeting sequence binding, peroxisome targeting signal-2 binding\", \"id\": \"73561\"}}, {\"position\": {\"x\": -1144.6314704958613, \"y\": 1368.232895008302}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851831.0, \"degree_layout\": 5, \"label\": \"PEX5\", \"uniprot\": \"PEX5_YEAST\", \"name\": \"YDR244W\", \"sgd\": \"S000002652\", \"annotation_DB_Object_Name\": \"peroxin\", \"alias\": \"PAS10, PEX5, S000002652, peroxin\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytosol, peroxisome\", \"SUID\": 73557, \"kegg\": \"sce:YDR244W\", \"shared_name\": \"YDR244W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"peroxisome organization and biogenesis, protein targeting to peroxisome\", \"annotation_GO_MOLECULAR_FUNCTION\": \"peroxisome targeting sequence binding, peroxisome targeting signal-1 binding\", \"id\": \"73557\"}}, {\"position\": {\"x\": 1557.6491933791324, \"y\": -1157.4548084915739}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851152.0, \"degree_layout\": 2, \"label\": \"IMDH3\", \"uniprot\": \"IMDH3_YEAST\", \"name\": \"YLR432W\", \"sgd\": \"S000004424\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"IMD3, S000004424\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm\", \"SUID\": 73554, \"kegg\": \"sce:YLR432W\", \"shared_name\": \"YLR432W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"GTP biosynthetic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"IMP dehydrogenase activity\", \"id\": \"73554\"}}, {\"position\": {\"x\": 1543.441004610628, \"y\": -1192.5363243755073}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851745.0, \"degree_layout\": 2, \"label\": \"TAF10\", \"uniprot\": \"TAF10_YEAST\", \"name\": \"YDR167W\", \"sgd\": \"S000002574\", \"annotation_DB_Object_Name\": \"TFIID subunit, TafII25\", \"alias\": \"TafII25, S000002574, TAF10, TAF23, TAF25, TFIID subunit\", \"annotation_GO_CELLULAR_COMPONENT\": \"SAGA complex, SLIK (SAGA-like) complex, transcription factor TFIID complex\", \"SUID\": 73553, \"kegg\": \"sce:YDR167W\", \"shared_name\": \"YDR167W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"G1-specific transcription in mitotic cell cycle, chromatin modification, establishment and/or maintenance of chromatin architecture, histone acetylation, protein amino acid acetylation, transcription initiation from RNA polymerase II promoter\", \"annotation_GO_MOLECULAR_FUNCTION\": \"general RNA polymerase II transcription factor activity\", \"id\": \"73553\"}}, {\"position\": {\"x\": -1279.6113018616772, \"y\": -191.8388472348226}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 850872.0, \"degree_layout\": 1, \"label\": \"CBF5\", \"uniprot\": \"CBF5_YEAST\", \"name\": \"YLR175W\", \"sgd\": \"S000004165\", \"annotation_DB_Object_Name\": \"pseudouridine synthase\", \"alias\": \"CBF5, S000004165, pseudouridine synthase\", \"annotation_GO_CELLULAR_COMPONENT\": \"box H/ACA snoRNP complex, nucleolus\", \"SUID\": 73551, \"kegg\": \"sce:YLR175W\", \"shared_name\": \"YLR175W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"35S primary transcript processing, rRNA pseudouridine synthesis\", \"annotation_GO_MOLECULAR_FUNCTION\": \"pseudouridylate synthase activity\", \"id\": \"73551\"}}, {\"position\": {\"x\": -1334.6055643545444, \"y\": -489.08455168534346}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855606.0, \"degree_layout\": 1, \"label\": \"MASY\", \"uniprot\": \"MASY_YEAST\", \"name\": \"YNL117W\", \"sgd\": \"S000005061\", \"annotation_DB_Object_Name\": \"carbon-catabolite sensitive malate synthase\", \"alias\": \"MLS1, S000005061, carbon-catabolite sensitive malate synthase\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, peroxisomal matrix\", \"SUID\": 73549, \"kegg\": \"sce:YNL117W\", \"shared_name\": \"YNL117W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"glyoxylate cycle\", \"annotation_GO_MOLECULAR_FUNCTION\": \"malate synthase activity\", \"id\": \"73549\"}}, {\"position\": {\"x\": 122.50660284026927, \"y\": 887.5615929662192}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854256.0, \"degree_layout\": 1, \"label\": \"VPS21\", \"uniprot\": \"VPS21_YEAST\", \"name\": \"YOR089C\", \"sgd\": \"S000005615\", \"annotation_DB_Object_Name\": \"small GTP-binding protein\", \"alias\": \"S000005615, VPS12, VPS21, VPT12, YPT21, YPT51, small GTP-binding protein\", \"annotation_GO_CELLULAR_COMPONENT\": \"late endosome, mitochondrial outer membrane, mitochondrion\", \"SUID\": 73547, \"kegg\": \"sce:YOR089C\", \"shared_name\": \"YOR089C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"endocytosis, protein targeting to vacuole\", \"annotation_GO_MOLECULAR_FUNCTION\": \"GTPase activity\", \"id\": \"73547\"}}, {\"position\": {\"x\": -1289.752984063623, \"y\": -228.3043332032127}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856296.0, \"degree_layout\": 1, \"label\": \"MET16\", \"uniprot\": \"MET16_YEAST\", \"name\": \"YPR167C\", \"sgd\": \"S000006371\", \"annotation_DB_Object_Name\": \"3'phosphoadenylylsulfate reductase\", \"alias\": \"3'phosphoadenylylsulfate reductase, MET16, S000006371\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, intracellular\", \"SUID\": 73545, \"kegg\": \"sce:YPR167C\", \"shared_name\": \"YPR167C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"methionine metabolic process, sulfate assimilation\", \"annotation_GO_MOLECULAR_FUNCTION\": \"phosphoadenylyl-sulfate reductase (thioredoxin) activity\", \"id\": \"73545\"}}, {\"position\": {\"x\": -1057.8547226723497, \"y\": 988.0391214278181}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855507.0, \"degree_layout\": 2, \"label\": \"PEX17\", \"uniprot\": \"PEX17_YEAST\", \"name\": \"YNL214W\", \"sgd\": \"S000005158\", \"annotation_DB_Object_Name\": \"peroxin\", \"alias\": \"PAS9, PEX17, S000005158, peroxin\", \"annotation_GO_CELLULAR_COMPONENT\": \"peroxisomal membrane\", \"SUID\": 73543, \"kegg\": \"sce:YNL214W\", \"shared_name\": \"YNL214W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"peroxisome organization and biogenesis\", \"annotation_GO_MOLECULAR_FUNCTION\": \"protein binding\", \"id\": \"73543\"}}, {\"position\": {\"x\": 1354.6901372115733, \"y\": -1519.4624166833657}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852432.0, \"degree_layout\": 2, \"label\": \"CKS1\", \"uniprot\": \"CKS1_YEAST\", \"name\": \"YBR135W\", \"sgd\": \"S000000339\", \"annotation_DB_Object_Name\": \"Cdc28 protein kinase subunit\", \"alias\": \"CKS1, Cdc28 protein kinase subunit, S000000339\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, nucleus\", \"SUID\": 73541, \"kegg\": \"sce:YBR135W\", \"shared_name\": \"YBR135W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"regulation of progression through cell cycle, transcription\", \"annotation_GO_MOLECULAR_FUNCTION\": \"protein kinase activator activity\", \"id\": \"73541\"}}, {\"position\": {\"x\": -659.1944464141646, \"y\": 1468.232895008302}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855005.0, \"degree_layout\": 1, \"label\": \"YAP1\", \"uniprot\": \"YAP1_YEAST\", \"name\": \"YML007W\", \"sgd\": \"S000004466\", \"annotation_DB_Object_Name\": \"jun-like transcription factor\", \"alias\": \"PAR1, S000004466, SNQ3, YAP1, jun-like transcription factor\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, nucleus\", \"SUID\": 73539, \"kegg\": \"sce:YML007W\", \"shared_name\": \"YML007W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"response to arsenic, response to drug, response to heat, response to singlet oxygen, transcription\", \"annotation_GO_MOLECULAR_FUNCTION\": \"transcription factor activity\", \"id\": \"73539\"}}, {\"position\": {\"x\": -459.19444641416464, \"y\": 1668.232895008302}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856846.0, \"degree_layout\": 2, \"label\": \"IMB4\", \"uniprot\": \"IMB4_YEAST\", \"name\": \"YER110C\", \"sgd\": \"S000000912\", \"annotation_DB_Object_Name\": \"karyopherin beta 4\", \"alias\": \"KAP123, S000000912, YRB4, karyopherin beta 4\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, nuclear pore, nucleus\", \"SUID\": 73538, \"kegg\": \"sce:YER110C\", \"shared_name\": \"YER110C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"protein import into nucleus\", \"annotation_GO_MOLECULAR_FUNCTION\": \"protein carrier activity\", \"id\": \"73538\"}}, {\"position\": {\"x\": -988.2651740022554, \"y\": 1292.9308553800486}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852724.0, \"degree_layout\": 4, \"label\": \"PEX14\", \"uniprot\": \"PEX14_YEAST\", \"name\": \"YGL153W\", \"sgd\": \"S000003121\", \"annotation_DB_Object_Name\": \"peroxin\", \"alias\": \"PEX14, S000003121, peroxin\", \"annotation_GO_CELLULAR_COMPONENT\": \"peroxisomal membrane\", \"SUID\": 73536, \"kegg\": \"sce:YGL153W\", \"shared_name\": \"YGL153W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"protein import into peroxisome matrix, protein targeting to peroxisome\", \"annotation_GO_MOLECULAR_FUNCTION\": \"protein binding\", \"id\": \"73536\"}}, {\"position\": {\"x\": -1231.408218319373, \"y\": 988.0391214278181}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 850888.0, \"degree_layout\": 2, \"label\": \"PEX13\", \"uniprot\": \"PEX13_YEAST\", \"name\": \"YLR191W\", \"sgd\": \"S000004181\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"PAS20, PEX13, S000004181\", \"annotation_GO_CELLULAR_COMPONENT\": \"peroxisomal membrane\", \"SUID\": 73535, \"kegg\": \"sce:YLR191W\", \"shared_name\": \"YLR191W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"peroxisome organization and biogenesis, protein import into peroxisome matrix, protein targeting to peroxisome\", \"annotation_GO_MOLECULAR_FUNCTION\": \"protein binding\", \"id\": \"73535\"}}, {\"position\": {\"x\": -1056.500886773681, \"y\": -1489.0391959082529}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854016.0, \"degree_layout\": 2, \"label\": \"DCP1\", \"uniprot\": \"DCP1_YEAST\", \"name\": \"YOL149W\", \"sgd\": \"S000005509\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"DCP1, S000005509\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasmic mRNA processing body\", \"SUID\": 73531, \"kegg\": \"sce:YOL149W\", \"shared_name\": \"YOL149W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"deadenylation-dependent decapping, mRNA catabolic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"enzyme activator activity, m7G(5')pppN diphosphatase activity, mRNA binding\", \"id\": \"73531\"}}, {\"position\": {\"x\": -250.6767331737029, \"y\": 830.6251591380953}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855061.0, \"degree_layout\": 1, \"label\": \"IOC4\", \"uniprot\": \"IOC4_YEAST\", \"name\": \"YMR044W\", \"sgd\": \"S000004647\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"IOC4, S000004647\", \"annotation_GO_CELLULAR_COMPONENT\": \"ISW1 complex\", \"SUID\": 73529, \"kegg\": \"sce:YMR044W\", \"shared_name\": \"YMR044W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"chromatin remodeling\", \"annotation_GO_MOLECULAR_FUNCTION\": \"protein binding\", \"id\": \"73529\"}}, {\"position\": {\"x\": -1336.0368483098546, \"y\": -715.9662747543048}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854544.0, \"degree_layout\": 1, \"label\": \"PSA7\", \"uniprot\": \"PSA7_YEAST\", \"name\": \"YOR362C\", \"sgd\": \"S000005889\", \"annotation_DB_Object_Name\": \"proteasome component YC1 (protease yscE subunit 1)\", \"alias\": \"PRE10, S000005889, proteasome component YC1 (protease yscE subunit 1)\", \"annotation_GO_CELLULAR_COMPONENT\": \"proteasome core complex, alpha-subunit complex (sensu the Eukaryota research community)\", \"SUID\": 73527, \"kegg\": \"sce:YOR362C\", \"shared_name\": \"YOR362C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"ubiquitin-dependent protein catabolic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"endopeptidase activity\", \"id\": \"73527\"}}, {\"position\": {\"x\": 1331.4127476370716, \"y\": -1549.3078270406224}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856839.0, \"degree_layout\": 2, \"label\": \"RS8B\", \"uniprot\": \"RS8B_YEAST\", \"name\": \"YER102W\", \"sgd\": \"S000000904\", \"annotation_DB_Object_Name\": \"ribosomal protein S8B (S14B) (rp19) (YS9)\", \"alias\": \"RPS8B, S000000904, ribosomal protein S8B (S14B) (rp19) (YS9)\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytosolic small ribosomal subunit (sensu the Eukaryota research community)\", \"SUID\": 73525, \"kegg\": \"sce:YER102W\", \"shared_name\": \"YER102W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"null\", \"annotation_GO_MOLECULAR_FUNCTION\": \"structural constituent of ribosome\", \"id\": \"73525\"}}, {\"position\": {\"x\": -1338.1846290744193, \"y\": -678.1777523885985}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854095.0, \"degree_layout\": 1, \"label\": \"GPD2\", \"uniprot\": \"GPD2_YEAST\", \"name\": \"YOL059W\", \"sgd\": \"S000005420\", \"annotation_DB_Object_Name\": \"glycerol-3-phosphate dehydrogenase (NAD+)\", \"alias\": \"GPD2, GPD3, S000005420, glycerol-3-phosphate dehydrogenase (NAD+)\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytosol, mitochondrion\", \"SUID\": 73523, \"kegg\": \"sce:YOL059W\", \"shared_name\": \"YOL059W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"NADH oxidation, glycerol metabolic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"glycerol-3-phosphate dehydrogenase (NAD+) activity\", \"id\": \"73523\"}}, {\"position\": {\"x\": -869.773866766045, \"y\": 478.3777991925329}, \"selected\": false, \"data\": {\"selected\": false, \"SUID\": 73521, \"degree_layout\": 1, \"name\": \"YBR190W\", \"shared_name\": \"YBR190W\", \"id\": \"73521\"}}, {\"position\": {\"x\": -514.7241445025746, \"y\": -1951.4647844573506}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856840.0, \"degree_layout\": 2, \"label\": \"HSP74\", \"uniprot\": \"HSP74_YEAST\", \"name\": \"YER103W\", \"sgd\": \"S000000905\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"S000000905, SSA4, YG107\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, nucleus\", \"SUID\": 73515, \"kegg\": \"sce:YER103W\", \"shared_name\": \"YER103W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"SRP-dependent cotranslational protein targeting to membrane, translocation, protein folding, response to stress\", \"annotation_GO_MOLECULAR_FUNCTION\": \"ATPase activity, unfolded protein binding\", \"id\": \"73515\"}}, {\"position\": {\"x\": -366.4119721753385, \"y\": 2468.2328950083024}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856226.0, \"degree_layout\": 1, \"label\": \"RPAC1\", \"uniprot\": \"RPAC1_YEAST\", \"name\": \"YPR110C\", \"sgd\": \"S000006314\", \"annotation_DB_Object_Name\": \"AC40, RNA polymerase III subunit\", \"alias\": \" RNA polymerase III subunit, AC40, RPC40, RPC5, S000006314\", \"annotation_GO_CELLULAR_COMPONENT\": \"DNA-directed RNA polymerase I complex, DNA-directed RNA polymerase III complex\", \"SUID\": 73513, \"kegg\": \"sce:YPR110C\", \"shared_name\": \"YPR110C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"transcription from RNA polymerase I promoter, transcription from RNA polymerase III promoter\", \"annotation_GO_MOLECULAR_FUNCTION\": \"DNA-directed RNA polymerase activity\", \"id\": \"73513\"}}, {\"position\": {\"x\": -366.4119721753385, \"y\": 2668.2328950083024}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855609.0, \"degree_layout\": 1, \"label\": \"RPAC2\", \"uniprot\": \"RPAC2_YEAST\", \"name\": \"YNL113W\", \"sgd\": \"S000005057\", \"annotation_DB_Object_Name\": \"AC19, RNA polymerases I (A) and III (C) subunit\", \"alias\": \" RNA polymerases I (A) and III (C) subunit, AC19, RPC19, S000005057\", \"annotation_GO_CELLULAR_COMPONENT\": \"DNA-directed RNA polymerase I complex, DNA-directed RNA polymerase III complex\", \"SUID\": 73512, \"kegg\": \"sce:YNL113W\", \"shared_name\": \"YNL113W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"transcription from RNA polymerase I promoter, transcription from RNA polymerase III promoter\", \"annotation_GO_MOLECULAR_FUNCTION\": \"DNA-directed RNA polymerase activity\", \"id\": \"73512\"}}, {\"position\": {\"x\": -1067.4696972783017, \"y\": 249.69518874851684}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851956.0, \"degree_layout\": 1, \"label\": \"TRPD\", \"uniprot\": \"TRPD_YEAST\", \"name\": \"YDR354W\", \"sgd\": \"S000002762\", \"annotation_DB_Object_Name\": \"anthranilate phosphoribosyl transferase\", \"alias\": \"S000002762, TRP4, anthranilate phosphoribosyl transferase\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, nucleus\", \"SUID\": 73510, \"kegg\": \"sce:YDR354W\", \"shared_name\": \"YDR354W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"tryptophan biosynthetic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"anthranilate phosphoribosyltransferase activity\", \"id\": \"73510\"}}, {\"position\": {\"x\": -466.4119721753385, \"y\": 2668.2328950083024}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856824.0, \"degree_layout\": 1, \"label\": \"TRPE\", \"uniprot\": \"TRPE_YEAST\", \"name\": \"YER090W\", \"sgd\": \"S000000892\", \"annotation_DB_Object_Name\": \"anthranilate synthase component I\", \"alias\": \"S000000892, TRP2, anthranilate synthase component I\", \"annotation_GO_CELLULAR_COMPONENT\": \"anthranilate synthase complex, cytoplasm\", \"SUID\": 73508, \"kegg\": \"sce:YER090W\", \"shared_name\": \"YER090W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"tryptophan biosynthetic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"anthranilate synthase activity\", \"id\": \"73508\"}}, {\"position\": {\"x\": -466.4119721753385, \"y\": 2468.2328950083024}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 853669.0, \"degree_layout\": 1, \"label\": \"TRPG\", \"uniprot\": \"TRPG_YEAST\", \"name\": \"YKL211C\", \"sgd\": \"S000001694\", \"annotation_DB_Object_Name\": \"anthranilate synthase component II, indole-3-phosphate\", \"alias\": \"indole-3-phosphate, S000001694, TRP3, anthranilate synthase component II\", \"annotation_GO_CELLULAR_COMPONENT\": \"anthranilate synthase complex, cytoplasm\", \"SUID\": 73507, \"kegg\": \"sce:YKL211C\", \"shared_name\": \"YKL211C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"tryptophan biosynthetic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"anthranilate synthase activity, indole-3-glycerol-phosphate synthase activity\", \"id\": \"73507\"}}, {\"position\": {\"x\": 179.2778549059632, \"y\": -2111.8414917057075}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851724.0, \"degree_layout\": 2, \"label\": \"SWI5\", \"uniprot\": \"SWI5_YEAST\", \"name\": \"YDR146C\", \"sgd\": \"S000002553\", \"annotation_DB_Object_Name\": \"transcriptional activator\", \"alias\": \"S000002553, SWI5, transcriptional activator\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, nucleus\", \"SUID\": 73504, \"kegg\": \"sce:YDR146C\", \"shared_name\": \"YDR146C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"G1-specific transcription in mitotic cell cycle\", \"annotation_GO_MOLECULAR_FUNCTION\": \"transcriptional activator activity\", \"id\": \"73504\"}}, {\"position\": {\"x\": -769.5877111641506, \"y\": -1788.9103624628638}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856847.0, \"degree_layout\": 2, \"label\": \"SWI4\", \"uniprot\": \"SWI4_YEAST\", \"name\": \"YER111C\", \"sgd\": \"S000000913\", \"annotation_DB_Object_Name\": \"transcription factor\", \"alias\": \"ART1, S000000913, SWI4, transcription factor\", \"annotation_GO_CELLULAR_COMPONENT\": \"nucleus\", \"SUID\": 73502, \"kegg\": \"sce:YER111C\", \"shared_name\": \"YER111C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"G1/S transition of mitotic cell cycle, transcription\", \"annotation_GO_MOLECULAR_FUNCTION\": \"DNA binding, transcription factor activity\", \"id\": \"73502\"}}, {\"position\": {\"x\": 153.20327009532488, \"y\": 1968.232895008302}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854204.0, \"degree_layout\": 1, \"label\": \"CSK2C\", \"uniprot\": \"CSK2C_YEAST\", \"name\": \"YOR039W\", \"sgd\": \"S000005565\", \"annotation_DB_Object_Name\": \"protein kinase CK2, beta' subunit\", \"alias\": \"beta' subunit, CKB2, S000005565, protein kinase CK2\", \"annotation_GO_CELLULAR_COMPONENT\": \"protein kinase CK2 complex\", \"SUID\": 73500, \"kegg\": \"sce:YOR039W\", \"shared_name\": \"YOR039W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"G1/S transition of mitotic cell cycle, G2/M transition of mitotic cell cycle, cell ion homeostasis, establishment of cell polarity (sensu the Fungi research community), flocculation via cell wall protein-carbohydrate interaction, protein amino acid phosphorylation, regulation of transcription from RNA polymerase I promoter, regulation of transcription from RNA polymerase III promoter, response to DNA damage stimulus\", \"annotation_GO_MOLECULAR_FUNCTION\": \"protein kinase CK2 regulator activity\", \"id\": \"73500\"}}, {\"position\": {\"x\": -1109.3734682976053, \"y\": 186.65945777139615}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854984.0, \"degree_layout\": 1, \"label\": \"RS17A\", \"uniprot\": \"RS17A_YEAST\", \"name\": \"YML024W\", \"sgd\": \"S000004486\", \"annotation_DB_Object_Name\": \"ribosomal protein S17A (rp51A)\", \"alias\": \"RP51A, RPL51A, RPS17A, S000004486, ribosomal protein S17A (rp51A)\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytosolic small ribosomal subunit (sensu the Eukaryota research community)\", \"SUID\": 73498, \"kegg\": \"sce:YML024W\", \"shared_name\": \"YML024W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"ribosomal small subunit assembly and maintenance, telomere maintenance\", \"annotation_GO_MOLECULAR_FUNCTION\": \"structural constituent of ribosome\", \"id\": \"73498\"}}, {\"position\": {\"x\": -827.776017598483, \"y\": -1740.500132141554}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854693.0, \"degree_layout\": 2, \"label\": \"SDP1\", \"uniprot\": \"SDP1_YEAST\", \"name\": \"YIL113W\", \"sgd\": \"S000001375\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"S000001375, SDP1\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, nucleus\", \"SUID\": 73496, \"kegg\": \"sce:YIL113W\", \"shared_name\": \"YIL113W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"MAPKKK cascade during cell wall biogenesis\", \"annotation_GO_MOLECULAR_FUNCTION\": \"MAP kinase phosphatase activity\", \"id\": \"73496\"}}, {\"position\": {\"x\": -497.77055890344116, \"y\": 735.9535287698411}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 850641.0, \"degree_layout\": 1, \"label\": \"KNS1\", \"uniprot\": \"KNS1_YEAST\", \"name\": \"YLL019C\", \"sgd\": \"S000003942\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"KNS1, L124, S000003942\", \"annotation_GO_CELLULAR_COMPONENT\": \"cellular_component\", \"SUID\": 73495, \"kegg\": \"sce:YLL019C\", \"shared_name\": \"YLL019C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"protein amino acid phosphorylation\", \"annotation_GO_MOLECULAR_FUNCTION\": \"protein serine/threonine kinase activity, protein-tyrosine kinase activity\", \"id\": \"73495\"}}, {\"position\": {\"x\": 902.1433542557694, \"y\": -1915.7044188329119}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851572.0, \"degree_layout\": 2, \"label\": \"GAL3\", \"uniprot\": \"GAL3_YEAST\", \"name\": \"YDR009W\", \"sgd\": \"S000002416\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"GAL3, S000002416\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm\", \"SUID\": 73493, \"kegg\": \"sce:YDR009W\", \"shared_name\": \"YDR009W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"galactose metabolic process, positive regulation of transcription by galactose\", \"annotation_GO_MOLECULAR_FUNCTION\": \"transcriptional activator activity\", \"id\": \"73493\"}}, {\"position\": {\"x\": 1105.068883096614, \"y\": 553.1623291919466}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854954.0, \"degree_layout\": 4, \"label\": \"GAL80\", \"uniprot\": \"GAL80_YEAST\", \"name\": \"YML051W\", \"sgd\": \"S000004515\", \"annotation_DB_Object_Name\": \"transcriptional regulator\", \"alias\": \"GAL80, S000004515, transcriptional regulator\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, nucleus\", \"SUID\": 73491, \"kegg\": \"sce:YML051W\", \"shared_name\": \"YML051W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"galactose metabolic process, positive regulation of transcription by galactose\", \"annotation_GO_MOLECULAR_FUNCTION\": \"specific transcriptional repressor activity\", \"id\": \"73491\"}}, {\"position\": {\"x\": -662.1526886324386, \"y\": 642.4251176733753}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856468.0, \"degree_layout\": 1, \"label\": \"PCL5\", \"uniprot\": \"PCL5_YEAST\", \"name\": \"YHR071W\", \"sgd\": \"S000001113\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"PCL5, S000001113\", \"annotation_GO_CELLULAR_COMPONENT\": \"cyclin-dependent protein kinase holoenzyme complex\", \"SUID\": 73488, \"kegg\": \"sce:YHR071W\", \"shared_name\": \"YHR071W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"cell cycle\", \"annotation_GO_MOLECULAR_FUNCTION\": \"cyclin-dependent protein kinase regulator activity\", \"id\": \"73488\"}}, {\"position\": {\"x\": -446.2921093396077, \"y\": -1983.814219829743}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856076.0, \"degree_layout\": 2, \"label\": \"PHO85\", \"uniprot\": \"PHO85_YEAST\", \"name\": \"YPL031C\", \"sgd\": \"S000005952\", \"annotation_DB_Object_Name\": \"cyclin-dependent protein kinase\", \"alias\": \"LDB15, PHO85, S000005952, cyclin-dependent protein kinase\", \"annotation_GO_CELLULAR_COMPONENT\": \"nucleus\", \"SUID\": 73487, \"kegg\": \"sce:YPL031C\", \"shared_name\": \"YPL031C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"cell cycle, glycogen metabolic process, phosphate metabolic process, protein amino acid phosphorylation, telomere maintenance\", \"annotation_GO_MOLECULAR_FUNCTION\": \"cyclin-dependent protein kinase activity\", \"id\": \"73487\"}}, {\"position\": {\"x\": -1183.3827942283665, \"y\": 54.652837470783936}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854916.0, \"degree_layout\": 1, \"label\": \"PHO84\", \"uniprot\": \"PHO84_YEAST\", \"name\": \"YML123C\", \"sgd\": \"S000004592\", \"annotation_DB_Object_Name\": \"inorganic phosphate transporter\", \"alias\": \"PHO84, S000004592, inorganic phosphate transporter\", \"annotation_GO_CELLULAR_COMPONENT\": \"integral to plasma membrane\", \"SUID\": 73485, \"kegg\": \"sce:YML123C\", \"shared_name\": \"YML123C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"manganese ion transport, phosphate transport\", \"annotation_GO_MOLECULAR_FUNCTION\": \"inorganic phosphate transporter activity, manganese ion transporter activity\", \"id\": \"73485\"}}, {\"position\": {\"x\": -566.4119721753385, \"y\": 2468.2328950083024}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856888.0, \"degree_layout\": 1, \"label\": \"FTR1\", \"uniprot\": \"FTR1_YEAST\", \"name\": \"YER145C\", \"sgd\": \"S000000947\", \"annotation_DB_Object_Name\": \"iron permease\", \"alias\": \"FTR1, S000000947, iron permease\", \"annotation_GO_CELLULAR_COMPONENT\": \"plasma membrane\", \"SUID\": 73483, \"kegg\": \"sce:YER145C\", \"shared_name\": \"YER145C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"high affinity iron ion transport\", \"annotation_GO_MOLECULAR_FUNCTION\": \"iron ion transporter activity\", \"id\": \"73483\"}}, {\"position\": {\"x\": -566.4119721753385, \"y\": 2668.2328950083024}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855080.0, \"degree_layout\": 1, \"label\": \"FET3\", \"uniprot\": \"FET3_YEAST\", \"name\": \"YMR058W\", \"sgd\": \"S000004662\", \"annotation_DB_Object_Name\": \"multicopper oxidase\", \"alias\": \"FET3, S000004662, multicopper oxidase\", \"annotation_GO_CELLULAR_COMPONENT\": \"plasma membrane\", \"SUID\": 73482, \"kegg\": \"sce:YMR058W\", \"shared_name\": \"YMR058W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"high affinity iron ion transport, response to copper ion\", \"annotation_GO_MOLECULAR_FUNCTION\": \"ferroxidase activity, iron ion transporter activity\", \"id\": \"73482\"}}, {\"position\": {\"x\": -666.4119721753385, \"y\": 2668.2328950083024}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 853249.0, \"degree_layout\": 1, \"label\": \"RS22A\", \"uniprot\": \"RS22A_YEAST\", \"name\": \"YJL190C\", \"sgd\": \"S000003726\", \"annotation_DB_Object_Name\": \"ribosomal protein S22A (S24A) (rp50) (YS22)\", \"alias\": \"RPS22A, RPS24, S000003726, ribosomal protein S22A (S24A) (rp50) (YS22)\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytosolic small ribosomal subunit (sensu the Eukaryota research community)\", \"SUID\": 73480, \"kegg\": \"sce:YJL190C\", \"shared_name\": \"YJL190C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"telomere maintenance\", \"annotation_GO_MOLECULAR_FUNCTION\": \"structural constituent of ribosome\", \"id\": \"73480\"}}, {\"position\": {\"x\": -666.4119721753385, \"y\": 2468.2328950083024}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854901.0, \"degree_layout\": 1, \"label\": \"FKBP3\", \"uniprot\": \"FKBP3_YEAST\", \"name\": \"YML074C\", \"sgd\": \"S000004539\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"FPR3, NPI46, S000004539\", \"annotation_GO_CELLULAR_COMPONENT\": \"nucleolus\", \"SUID\": 73479, \"kegg\": \"sce:YML074C\", \"shared_name\": \"YML074C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"meiotic recombination checkpoint\", \"annotation_GO_MOLECULAR_FUNCTION\": \"peptidyl-prolyl cis-trans isomerase activity\", \"id\": \"73479\"}}, {\"position\": {\"x\": 1528.352197389698, \"y\": -1227.2481851934724}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854537.0, \"degree_layout\": 2, \"label\": \"GDS1\", \"uniprot\": \"GDS1_YEAST\", \"name\": \"YOR355W\", \"sgd\": \"S000005882\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"GDS1, S000005882\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, mitochondrion, nucleus\", \"SUID\": 73477, \"kegg\": \"sce:YOR355W\", \"shared_name\": \"YOR355W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"aerobic respiration\", \"annotation_GO_MOLECULAR_FUNCTION\": \"molecular_function\", \"id\": \"73477\"}}, {\"position\": {\"x\": 84.68420266578838, \"y\": 886.1293116259988}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 850505.0, \"degree_layout\": 1, \"label\": \"YPT1\", \"uniprot\": \"YPT1_YEAST\", \"name\": \"YFL038C\", \"sgd\": \"S000001856\", \"annotation_DB_Object_Name\": \"GTP-binding protein\", \"alias\": \"GTP-binding protein, S000001856, YP2, YPT1\", \"annotation_GO_CELLULAR_COMPONENT\": \"Golgi membrane, endoplasmic reticulum membrane, mitochondrion\", \"SUID\": 73475, \"kegg\": \"sce:YFL038C\", \"shared_name\": \"YFL038C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"ER to Golgi vesicle-mediated transport, protein complex assembly\", \"annotation_GO_MOLECULAR_FUNCTION\": \"GTPase activity\", \"id\": \"73475\"}}, {\"position\": {\"x\": 1257.1685116602769, \"y\": -1635.1890803255385}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854644.0, \"degree_layout\": 2, \"label\": \"INV2\", \"uniprot\": \"INV2_YEAST\", \"name\": \"YIL162W\", \"sgd\": \"S000001424\", \"annotation_DB_Object_Name\": \"invertase (sucrose hydrolyzing enzyme)\", \"alias\": \"S000001424, SUC2, invertase (sucrose hydrolyzing enzyme)\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, extracellular region, mitochondrion\", \"SUID\": 73473, \"kegg\": \"sce:YIL162W\", \"shared_name\": \"YIL162W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"sucrose catabolic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"beta-fructofuranosidase activity\", \"id\": \"73473\"}}, {\"position\": {\"x\": -813.4591520295423, \"y\": 528.955287362711}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852340.0, \"degree_layout\": 1, \"label\": \"REG2\", \"uniprot\": \"REG2_YEAST\", \"name\": \"YBR050C\", \"sgd\": \"S000000254\", \"annotation_DB_Object_Name\": \"Glc7p regulatory subunit\", \"alias\": \"Glc7p regulatory subunit, REG2, S000000254\", \"annotation_GO_CELLULAR_COMPONENT\": \"protein phosphatase type 1 complex\", \"SUID\": 73469, \"kegg\": \"sce:YBR050C\", \"shared_name\": \"YBR050C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"negative regulation of transcription from RNA polymerase II promoter\", \"annotation_GO_MOLECULAR_FUNCTION\": \"protein phosphatase type 1 regulator activity\", \"id\": \"73469\"}}, {\"position\": {\"x\": -784.3626829882002, \"y\": 553.1623291919461}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855359.0, \"degree_layout\": 1, \"label\": \"GLC8\", \"uniprot\": \"GLC8_YEAST\", \"name\": \"YMR311C\", \"sgd\": \"S000004928\", \"annotation_DB_Object_Name\": \"protein phosphatase 1 (Glc7p) regulator\", \"alias\": \"GLC8, S000004928, protein phosphatase 1 (Glc7p) regulator\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, nucleus\", \"SUID\": 73467, \"kegg\": \"sce:YMR311C\", \"shared_name\": \"YMR311C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"chromosome segregation, glycogen biosynthetic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"enzyme activator activity\", \"id\": \"73467\"}}, {\"position\": {\"x\": -754.6647090474924, \"y\": 576.6275316972121}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854493.0, \"degree_layout\": 1, \"label\": \"SFG1\", \"uniprot\": \"SFG1_YEAST\", \"name\": \"YOR315W\", \"sgd\": \"S000005842\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"S000005842, SFG1\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, nucleus\", \"SUID\": 73465, \"kegg\": \"sce:YOR315W\", \"shared_name\": \"YOR315W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"positive regulation of transcription from RNA polymerase II promoter, pseudohyphal growth\", \"annotation_GO_MOLECULAR_FUNCTION\": \"specific RNA polymerase II transcription factor activity\", \"id\": \"73465\"}}, {\"position\": {\"x\": 1660.084484058814, \"y\": -640.3470694337102}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854350.0, \"degree_layout\": 3, \"label\": \"GAC1\", \"uniprot\": \"GAC1_YEAST\", \"name\": \"YOR178C\", \"sgd\": \"S000005704\", \"annotation_DB_Object_Name\": \"Glc7p regulatory subunit\", \"alias\": \"GAC1, Glc7p regulatory subunit, S000005704\", \"annotation_GO_CELLULAR_COMPONENT\": \"protein phosphatase type 1 complex\", \"SUID\": 73463, \"kegg\": \"sce:YOR178C\", \"shared_name\": \"YOR178C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"glycogen metabolic process, meiosis, mitotic spindle checkpoint, negative regulation of transcription from RNA polymerase II promoter, response to heat\", \"annotation_GO_MOLECULAR_FUNCTION\": \"heat shock protein binding, protein phosphatase type 1 regulator activity, structural molecule activity\", \"id\": \"73463\"}}, {\"position\": {\"x\": 607.6499666242054, \"y\": 819.795215585151}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856870.0, \"degree_layout\": 6, \"label\": \"PP12\", \"uniprot\": \"PP12_YEAST\", \"name\": \"YER133W\", \"sgd\": \"S000000935\", \"annotation_DB_Object_Name\": \"protein phosphatase type I\", \"alias\": \"CID1, DIS2, DIS2S1, GLC7, PP1, S000000935, protein phosphatase type I\", \"annotation_GO_CELLULAR_COMPONENT\": \"bud neck, mRNA cleavage and polyadenylation specificity factor complex, mating projection base, nucleolus, protein phosphatase type 1 complex, spindle pole body\", \"SUID\": 73461, \"kegg\": \"sce:YER133W\", \"shared_name\": \"YER133W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"35S primary transcript processing, cell budding, cell ion homeostasis, cellular morphogenesis during vegetative growth, chromosome segregation, glycogen metabolic process, histone dephosphorylation, meiosis, mitotic spindle checkpoint, protein amino acid dephosphorylation, regulation of carbohydrate metabolic process, regulation of progression through cell cycle, response to heat, sporulation (sensu the Fungi research community), transcription termination from Pol II promoter, RNA polymerase(A) coupled, transcription termination from Pol II promoter, RNA polymerase(A)-independent\", \"annotation_GO_MOLECULAR_FUNCTION\": \"protein phosphatase type 1 activity\", \"id\": \"73461\"}}, {\"position\": {\"x\": -766.4119721753385, \"y\": 2468.2328950083024}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854465.0, \"degree_layout\": 1, \"label\": \"SNF2\", \"uniprot\": \"SNF2_YEAST\", \"name\": \"YOR290C\", \"sgd\": \"S000005816\", \"annotation_DB_Object_Name\": \"transcriptional regulator\", \"alias\": \"GAM1, HAF1, S000005816, SNF2, SWI2, TYE3, transcriptional regulator\", \"annotation_GO_CELLULAR_COMPONENT\": \"SWI/SNF complex, chromatin remodeling complex\", \"SUID\": 73459, \"kegg\": \"sce:YOR290C\", \"shared_name\": \"YOR290C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"chromatin remodeling, double-strand break repair\", \"annotation_GO_MOLECULAR_FUNCTION\": \"DNA-dependent ATPase activity, general RNA polymerase II transcription factor activity\", \"id\": \"73459\"}}, {\"position\": {\"x\": -766.4119721753385, \"y\": 2668.2328950083024}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 850598.0, \"degree_layout\": 1, \"label\": \"RSC8\", \"uniprot\": \"RSC8_YEAST\", \"name\": \"YFR037C\", \"sgd\": \"S000001933\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"RSC8, S000001933, SWH3\", \"annotation_GO_CELLULAR_COMPONENT\": \"RSC complex, nucleus\", \"SUID\": 73458, \"kegg\": \"sce:YFR037C\", \"shared_name\": \"YFR037C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"chromatin remodeling, double-strand break repair via nonhomologous end joining\", \"annotation_GO_MOLECULAR_FUNCTION\": \"molecular_function\", \"id\": \"73458\"}}, {\"position\": {\"x\": 330.3146164561123, \"y\": -2102.300800516959}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 850594.0, \"degree_layout\": 2, \"label\": \"PHO4\", \"uniprot\": \"PHO4_YEAST\", \"name\": \"YFR034C\", \"sgd\": \"S000001930\", \"annotation_DB_Object_Name\": \"myc-family transcription factor\", \"alias\": \"PHO4, S000001930, myc-family transcription factor\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, nucleus\", \"SUID\": 73456, \"kegg\": \"sce:YFR034C\", \"shared_name\": \"YFR034C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"cellular response to phosphate starvation, phosphate metabolic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"transcription factor activity\", \"id\": \"73456\"}}, {\"position\": {\"x\": 1419.9028132318847, \"y\": -1426.5371610859997}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851191.0, \"degree_layout\": 2, \"label\": \"CG13\", \"uniprot\": \"CG13_YEAST\", \"name\": \"YAL040C\", \"sgd\": \"S000000038\", \"annotation_DB_Object_Name\": \"G1 cyclin\", \"alias\": \"CLN3, DAF1, FUN10, G1 cyclin, S000000038, WHI1\", 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false, \"data\": {\"selected\": false, \"entrez\": 852209.0, \"degree_layout\": 1, \"label\": \"AST1\", \"uniprot\": \"AST1_YEAST\", \"name\": \"YBL069W\", \"sgd\": \"S000000165\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"AST1, S000000165\", \"annotation_GO_CELLULAR_COMPONENT\": \"extrinsic to membrane\", \"SUID\": 73413, \"kegg\": \"sce:YBL069W\", \"shared_name\": \"YBL069W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"protein targeting to membrane\", \"annotation_GO_MOLECULAR_FUNCTION\": \"molecular_function\", \"id\": \"73413\"}}, {\"position\": {\"x\": 885.635629653753, \"y\": 701.0376942593668}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852806.0, \"degree_layout\": 5, \"label\": \"HSF\", \"uniprot\": \"HSF_YEAST\", \"name\": \"YGL073W\", \"sgd\": \"S000003041\", \"annotation_DB_Object_Name\": \"heat shock transcription factor\", \"alias\": \"EXA3, HSF1, MAS3, S000003041, heat shock transcription factor\", \"annotation_GO_CELLULAR_COMPONENT\": 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\"degree_layout\": 1, \"label\": \"HXKG\", \"uniprot\": \"HXKG_YEAST\", \"name\": \"YCL040W\", \"sgd\": \"S000000545\", \"annotation_DB_Object_Name\": \"glucokinase\", \"alias\": \"GLK1, HOR3, S000000545, glucokinase\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytosol\", \"SUID\": 73392, \"kegg\": \"sce:YCL040W\", \"shared_name\": \"YCL040W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"glucose import, glucose metabolic process, glycolysis, mannose metabolic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"glucokinase activity\", \"id\": \"73392\"}}, {\"position\": {\"x\": 301.4106282356569, \"y\": 1349.8425203028075}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 850504.0, \"degree_layout\": 3, \"label\": \"ACT\", \"uniprot\": \"ACT_YEAST\", \"name\": \"YFL039C\", \"sgd\": \"S000001855\", \"annotation_DB_Object_Name\": \"actin\", \"alias\": \"ABY1, ACT1, END7, S000001855, actin\", \"annotation_GO_CELLULAR_COMPONENT\": \"H4/H2A histone acetyltransferase complex, INO80 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418.9676786941515, \"y\": 988.0391214278181}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851427.0, \"degree_layout\": 1, \"label\": \"RLA3\", \"uniprot\": \"RLA3_YEAST\", \"name\": \"YDL130W\", \"sgd\": \"S000002288\", \"annotation_DB_Object_Name\": \"ribosomal protein P1B (L44') (YP1beta) (Ax)\", \"alias\": \"RPL44', RPLA3, RPP1B, S000002288, ribosomal protein P1B (L44') (YP1beta) (Ax)\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytosolic large ribosomal subunit (sensu the Eukaryota research community)\", \"SUID\": 73388, \"kegg\": \"sce:YDL130W\", \"shared_name\": \"YDL130W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"translational elongation\", \"annotation_GO_MOLECULAR_FUNCTION\": \"structural constituent of ribosome\", \"id\": \"73388\"}}, {\"position\": {\"x\": 491.6219314946876, \"y\": 1211.6459191777972}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851990.0, \"degree_layout\": 2, \"label\": \"RLA4\", \"uniprot\": \"RLA4_YEAST\", \"name\": 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\"EAP1\", \"uniprot\": \"EAP1_YEAST\", \"name\": \"YKL204W\", \"sgd\": \"S000001687\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"EAP1, S000001687\", \"annotation_GO_CELLULAR_COMPONENT\": \"mRNA cap complex\", \"SUID\": 73381, \"kegg\": \"sce:YKL204W\", \"shared_name\": \"YKL204W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"telomere maintenance\", \"annotation_GO_MOLECULAR_FUNCTION\": \"eukaryotic initiation factor 4E binding\", \"id\": \"73381\"}}, {\"position\": {\"x\": -61.45492782390991, \"y\": 988.0391214278181}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855568.0, \"degree_layout\": 2, \"label\": \"KC12\", \"uniprot\": \"KC12_YEAST\", \"name\": \"YNL154C\", \"sgd\": \"S000005098\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"S000005098, YCK2\", \"annotation_GO_CELLULAR_COMPONENT\": \"bud neck, mating projection, plasma membrane\", \"SUID\": 73380, \"kegg\": \"sce:YNL154C\", \"shared_name\": \"YNL154C\", 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\"copper ion import, iron ion transport\", \"annotation_GO_MOLECULAR_FUNCTION\": \"ferric-chelate reductase activity\", \"id\": \"73359\"}}, {\"position\": {\"x\": 613.0108912306565, \"y\": 2118.2328950083024}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855035.0, \"degree_layout\": 2, \"label\": \"MAC1\", \"uniprot\": \"MAC1_YEAST\", \"name\": \"YMR021C\", \"sgd\": \"S000004623\", \"annotation_DB_Object_Name\": \"metal-binding transcriptional activator\", \"alias\": \"CUA1, MAC1, S000004623, metal-binding transcriptional activator\", \"annotation_GO_CELLULAR_COMPONENT\": \"nucleus\", \"SUID\": 73358, \"kegg\": \"sce:YMR021C\", \"shared_name\": \"YMR021C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"cadmium ion homeostasis, positive regulation of transcription from RNA polymerase II promoter, regulation of protein catabolic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"specific RNA polymerase II transcription factor activity\", \"id\": \"73358\"}}, {\"position\": {\"x\": 1119.6934727112682, \"y\": -1765.0723429979812}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851092.0, \"degree_layout\": 2, \"label\": \"F16P\", \"uniprot\": \"F16P_YEAST\", \"name\": \"YLR377C\", \"sgd\": \"S000004369\", \"annotation_DB_Object_Name\": \"FBPase-2, fructose-1,6-bisphosphatase\", \"alias\": \"fructose-1, 6-bisphosphatase, ACN8, FBP1, FBPase-2, S000004369\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytosol\", \"SUID\": 73356, \"kegg\": \"sce:YLR377C\", \"shared_name\": \"YLR377C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"gluconeogenesis\", \"annotation_GO_MOLECULAR_FUNCTION\": \"fructose-bisphosphatase activity\", \"id\": \"73356\"}}, {\"position\": {\"x\": 1148.482217706898, \"y\": -1740.5001321415536}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856794.0, \"degree_layout\": 2, \"label\": \"ACEA\", \"uniprot\": \"ACEA_YEAST\", \"name\": \"YER065C\", \"sgd\": \"S000000867\", \"annotation_DB_Object_Name\": \"isocitrate lyase\", \"alias\": \"ICL1, S000000867, isocitrate lyase\", \"annotation_GO_CELLULAR_COMPONENT\": \"cellular_component\", \"SUID\": 73353, \"kegg\": \"sce:YER065C\", \"shared_name\": \"YER065C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"glyoxylate cycle\", \"annotation_GO_MOLECULAR_FUNCTION\": \"isocitrate lyase activity\", \"id\": \"73353\"}}, {\"position\": {\"x\": 1045.0903391529098, \"y\": 599.335954475773}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 853356.0, \"degree_layout\": 4, \"label\": \"SIP4\", \"uniprot\": \"SIP4_YEAST\", \"name\": \"YJL089W\", \"sgd\": \"S000003625\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"S000003625, SIP4\", \"annotation_GO_CELLULAR_COMPONENT\": \"nucleus\", \"SUID\": 73352, \"kegg\": \"sce:YJL089W\", \"shared_name\": \"YJL089W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"positive regulation of gluconeogenesis, regulation of transcription from RNA polymerase II promoter\", \"annotation_GO_MOLECULAR_FUNCTION\": \"specific RNA polymerase II transcription factor activity\", \"id\": \"73352\"}}, {\"position\": {\"x\": 1190.480066874459, \"y\": 478.3777991925338}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856425.0, \"degree_layout\": 4, \"label\": \"SLT2\", \"uniprot\": \"SLT2_YEAST\", \"name\": \"YHR030C\", \"sgd\": \"S000001072\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"BYC2, MPK1, S000001072, SLK2, SLT2\", \"annotation_GO_CELLULAR_COMPONENT\": \"bud tip, cytoplasm, nucleus\", \"SUID\": 73350, \"kegg\": \"sce:YHR030C\", \"shared_name\": \"YHR030C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"cell wall organization and biogenesis, protein amino acid phosphorylation, response to acid, signal transduction\", \"annotation_GO_MOLECULAR_FUNCTION\": \"MAP kinase activity\", \"id\": \"73350\"}}, {\"position\": {\"x\": -855.9356162242285, \"y\": -1715.2093751336452}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856016.0, \"degree_layout\": 2, \"label\": 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\"cytoplasm, plasma membrane\", \"SUID\": 73347, \"kegg\": \"sce:YGL208W\", \"shared_name\": \"YGL208W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"cell aging, cellular response to glucose starvation, invasive growth (sensu the Saccharomyces research community), protein amino acid phosphorylation, replicative cell aging, signal transduction\", \"annotation_GO_MOLECULAR_FUNCTION\": \"AMP-activated protein kinase activity\", \"id\": \"73347\"}}, {\"position\": {\"x\": 339.8058104737687, \"y\": 2118.2328950083024}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852763.0, \"degree_layout\": 2, \"label\": \"AAKG\", \"uniprot\": \"AAKG_YEAST\", \"name\": \"YGL115W\", \"sgd\": \"S000003083\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"CAT3, S000003083, SCI1, SNF4\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, nucleus, plasma membrane\", \"SUID\": 73346, \"kegg\": \"sce:YGL115W\", \"shared_name\": \"YGL115W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"peroxisome organization and biogenesis, regulation of transcription from RNA polymerase II promoter\", \"annotation_GO_MOLECULAR_FUNCTION\": \"protein kinase activator activity\", \"id\": \"73346\"}}, {\"position\": {\"x\": -548.3062526652989, \"y\": -1934.0054775941553}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851019.0, \"degree_layout\": 2, \"label\": \"CDC25\", \"uniprot\": \"CDC25_YEAST\", \"name\": \"YLR310C\", \"sgd\": \"S000004301\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"CDC25, CDC25', CTN1, S000004301\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, plasma membrane\", \"SUID\": 73344, \"kegg\": \"sce:YLR310C\", \"shared_name\": \"YLR310C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"Ras protein signal transduction, regulation of progression through cell cycle, replicative cell aging, traversing start control point of mitotic cell cycle\", \"annotation_GO_MOLECULAR_FUNCTION\": \"Ras guanyl-nucleotide exchange factor activity\", \"id\": \"73344\"}}, {\"position\": {\"x\": -630.2414312750805, \"y\": 662.778423023334}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855625.0, \"degree_layout\": 1, \"label\": \"RAS2\", \"uniprot\": \"RAS2_YEAST\", \"name\": \"YNL098C\", \"sgd\": \"S000005042\", \"annotation_DB_Object_Name\": \"small GTP-binding protein\", \"alias\": \"CTN5, CYR3, GLC5, RAS2, S000005042, TSL7, small GTP-binding protein\", \"annotation_GO_CELLULAR_COMPONENT\": \"plasma membrane\", \"SUID\": 73343, \"kegg\": \"sce:YNL098C\", \"shared_name\": \"YNL098C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"Ras protein signal transduction, adenylate cyclase activation, positive regulation of transcription by galactose, pseudohyphal growth, replicative cell aging, sporulation (sensu the Fungi research community)\", \"annotation_GO_MOLECULAR_FUNCTION\": \"GTPase activity\", \"id\": \"73343\"}}, {\"position\": {\"x\": -1284.797164270411, \"y\": -1013.8821563399626}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852902.0, \"degree_layout\": 1, \"label\": \"GABAT\", \"uniprot\": \"GABAT_YEAST\", \"name\": \"YGR019W\", \"sgd\": \"S000003251\", \"annotation_DB_Object_Name\": \"gamma-aminobutyrate (GABA) transaminase (4-aminobutyrate aminotransferase)\", \"alias\": \"S000003251, UGA1, gamma-aminobutyrate (GABA) transaminase (4-aminobutyrate aminotransferase)\", \"annotation_GO_CELLULAR_COMPONENT\": \"intracellular\", \"SUID\": 73341, \"kegg\": \"sce:YGR019W\", \"shared_name\": \"YGR019W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"nitrogen utilization\", \"annotation_GO_MOLECULAR_FUNCTION\": \"4-aminobutyrate transaminase activity\", \"id\": \"73341\"}}, {\"position\": {\"x\": -1294.4779723615836, \"y\": -977.2916201386699}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856147.0, \"degree_layout\": 1, \"label\": \"GLNA\", \"uniprot\": \"GLNA_YEAST\", \"name\": \"YPR035W\", \"sgd\": \"S000006239\", \"annotation_DB_Object_Name\": \"glutamine synthetase\", \"alias\": \"GLN1, S000006239, glutamine synthetase\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm\", \"SUID\": 73339, \"kegg\": \"sce:YPR035W\", \"shared_name\": \"YPR035W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"glutamine biosynthetic process, nitrogen compound metabolic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"glutamate-ammonia ligase activity\", \"id\": \"73339\"}}, {\"position\": {\"x\": 1449.8254362457426, \"y\": 154.368746456594}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856763.0, \"degree_layout\": 3, \"label\": \"GLN3\", \"uniprot\": \"GLN3_YEAST\", \"name\": \"YER040W\", \"sgd\": \"S000000842\", \"annotation_DB_Object_Name\": \"transcriptional activator of nitrogen-regulated genes\", \"alias\": \"GLN3, S000000842, transcriptional activator of nitrogen-regulated genes\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytosol, nucleus\", \"SUID\": 73338, \"kegg\": \"sce:YER040W\", \"shared_name\": \"YER040W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"nitrogen compound metabolic process, positive regulation of transcription, positive regulation of transcription from RNA polymerase II promoter, regulation of nitrogen utilization\", \"annotation_GO_MOLECULAR_FUNCTION\": \"transcription factor activity, transcriptional activator activity\", \"id\": \"73338\"}}, {\"position\": {\"x\": -883.4481391336739, \"y\": -1689.2161747159714}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852876.0, \"degree_layout\": 2, \"label\": \"PMA1\", \"uniprot\": \"PMA1_YEAST\", \"name\": \"YGL008C\", \"sgd\": \"S000002976\", \"annotation_DB_Object_Name\": \"plasma membrane H+-ATPase\", \"alias\": \"PMA1, S000002976, plasma membrane H+-ATPase\", \"annotation_GO_CELLULAR_COMPONENT\": \"lipid raft, mitochondrion, plasma membrane\", \"SUID\": 73336, \"kegg\": \"sce:YGL008C\", \"shared_name\": \"YGL008C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"proton transport, regulation of pH\", \"annotation_GO_MOLECULAR_FUNCTION\": \"hydrogen-exporting ATPase activity, phosphorylative mechanism\", \"id\": \"73336\"}}, {\"position\": {\"x\": 534.8541953481173, \"y\": 840.5366015026241}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854201.0, \"degree_layout\": 6, \"label\": \"PEP12\", \"uniprot\": \"PEP12_YEAST\", \"name\": \"YOR036W\", \"sgd\": \"S000005562\", \"annotation_DB_Object_Name\": \"c-terminal TMD\", \"alias\": \"PEP12, S000005562, VPL6, VPS6, VPT13, c-terminal TMD\", \"annotation_GO_CELLULAR_COMPONENT\": \"Golgi apparatus, endosome\", \"SUID\": 73334, \"kegg\": \"sce:YOR036W\", \"shared_name\": \"YOR036W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"Golgi to vacuole transport\", \"annotation_GO_MOLECULAR_FUNCTION\": \"t-SNARE activity\", \"id\": \"73334\"}}, {\"position\": {\"x\": -1191.6861787211285, \"y\": -1261.5682897434756}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851923.0, \"degree_layout\": 2, \"label\": \"PEP7\", \"uniprot\": \"PEP7_YEAST\", \"name\": \"YDR323C\", \"sgd\": \"S000002731\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"PEP7, S000002731, VAC1, VPL21, VPS19, VPT19\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, external side of endosome membrane\", \"SUID\": 73333, \"kegg\": \"sce:YDR323C\", \"shared_name\": \"YDR323C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"Golgi to vacuole transport, vesicle docking during exocytosis, vesicle fusion\", \"annotation_GO_MOLECULAR_FUNCTION\": \"molecular_function\", \"id\": \"73333\"}}, {\"position\": {\"x\": -84.5736059860611, \"y\": -2091.8294229599137}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852278.0, \"degree_layout\": 2, \"label\": \"PDR3\", \"uniprot\": \"PDR3_YEAST\", \"name\": \"YBL005W\", \"sgd\": \"S000000101\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"AMY2, PDR3, S000000101, TPE2\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, nucleus\", \"SUID\": 73331, \"kegg\": \"sce:YBL005W\", \"shared_name\": \"YBL005W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"positive regulation of transcription, DNA-dependent, regulation of transcription from RNA polymerase II promoter, response to drug\", \"annotation_GO_MOLECULAR_FUNCTION\": \"DNA binding, transcriptional activator activity\", \"id\": \"73331\"}}, {\"position\": {\"x\": 1659.6069841030014, \"y\": -564.6555811457245}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852457.0, \"degree_layout\": 3, \"label\": \"CDK1\", \"uniprot\": \"CDK1_YEAST\", \"name\": \"YBR160W\", \"sgd\": \"S000000364\", \"annotation_DB_Object_Name\": \"cyclin-dependent protein kinase\", \"alias\": \"CDC28, CDK1, HSL5, S000000364, SRM5, cyclin-dependent protein kinase\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, nucleus\", \"SUID\": 73325, \"kegg\": \"sce:YBR160W\", \"shared_name\": \"YBR160W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"G1/S transition of mitotic cell cycle, G2/M transition of mitotic cell cycle, S phase of mitotic cell cycle, protein amino acid phosphorylation, regulation of meiosis, regulation of progression through cell cycle, transcription\", \"annotation_GO_MOLECULAR_FUNCTION\": \"cyclin-dependent protein kinase activity\", \"id\": \"73325\"}}, {\"position\": {\"x\": -974.3971889694398, \"y\": 369.0293260480019}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 853760.0, \"degree_layout\": 1, \"label\": \"HSL1\", \"uniprot\": \"HSL1_YEAST\", \"name\": \"YKL101W\", \"sgd\": \"S000001584\", \"annotation_DB_Object_Name\": \"serine-threonine kinase\", \"alias\": \"HSL1, NIK1, S000001584, serine-threonine kinase\", \"annotation_GO_CELLULAR_COMPONENT\": \"bud neck, septin ring\", \"SUID\": 73324, \"kegg\": \"sce:YKL101W\", \"shared_name\": \"YKL101W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"G2/M transition of mitotic cell cycle, cell morphogenesis checkpoint, protein amino acid phosphorylation, regulation of progression through cell cycle, septin checkpoint\", \"annotation_GO_MOLECULAR_FUNCTION\": \"protein kinase activity\", \"id\": \"73324\"}}, {\"position\": {\"x\": -47.15707250919249, \"y\": -2097.538048658848}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854009.0, \"degree_layout\": 2, \"label\": \"HXT11\", \"uniprot\": \"HXT11_YEAST\", \"name\": \"YOL156W\", \"sgd\": \"S000005516\", \"annotation_DB_Object_Name\": \"glucose permease\", \"alias\": \"HXT11, LGT3, S000005516, glucose permease\", \"annotation_GO_CELLULAR_COMPONENT\": \"plasma membrane\", \"SUID\": 73322, \"kegg\": \"sce:YOL156W\", \"shared_name\": \"YOL156W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"hexose transport\", \"annotation_GO_MOLECULAR_FUNCTION\": \"fructose transporter activity, galactose transporter activity, glucose transporter activity, mannose transporter activity\", \"id\": \"73322\"}}, {\"position\": {\"x\": -121.83419349874325, \"y\": -2085.1785581284857}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 853236.0, \"degree_layout\": 2, \"label\": \"HXT9\", \"uniprot\": \"HXT9_YEAST\", \"name\": \"YJL219W\", \"sgd\": \"S000003755\", \"annotation_DB_Object_Name\": \"hexose permease\", \"alias\": \"HXT9, S000003755, hexose permease\", \"annotation_GO_CELLULAR_COMPONENT\": \"plasma membrane\", \"SUID\": 73320, \"kegg\": \"sce:YJL219W\", \"shared_name\": \"YJL219W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"hexose transport\", \"annotation_GO_MOLECULAR_FUNCTION\": \"fructose transporter activity, galactose transporter activity, glucose transporter activity, mannose transporter activity\", \"id\": \"73320\"}}, {\"position\": {\"x\": -798.9872726028528, \"y\": -1765.0723429979819}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 850639.0, \"degree_layout\": 2, \"label\": \"SPA2\", \"uniprot\": \"SPA2_YEAST\", \"name\": \"YLL021W\", \"sgd\": \"S000003944\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"FUS6, PEA1, S000003944, SPA2\", \"annotation_GO_CELLULAR_COMPONENT\": \"bud neck, bud tip, incipient bud site, mating projection tip, polarisome\", \"SUID\": 73318, \"kegg\": \"sce:YLL021W\", \"shared_name\": \"YLL021W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"Rho protein signal transduction, actin filament organization, bipolar bud site selection, establishment of cell polarity (sensu the Fungi research community), pseudohyphal growth, regulation of initiation of mating projection growth, regulation of termination of mating projection growth\", \"annotation_GO_MOLECULAR_FUNCTION\": \"cytoskeletal regulatory protein binding\", \"id\": \"73318\"}}, {\"position\": {\"x\": -140.39858948017022, \"y\": 857.579328854011}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 853984.0, \"degree_layout\": 1, \"label\": \"6P22\", \"uniprot\": \"6P22_YEAST\", \"name\": \"YOL136C\", \"sgd\": \"S000005496\", \"annotation_DB_Object_Name\": \"6-phosphofructo-2-kinase, PFK-2\", \"alias\": \" PFK-2, 6-phosphofructo-2-kinase, PFK27, S000005496\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm\", \"SUID\": 73316, \"kegg\": \"sce:YOL136C\", \"shared_name\": \"YOL136C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"fructose 2,6-bisphosphate metabolic process, regulation of glycolysis\", \"annotation_GO_MOLECULAR_FUNCTION\": \"6-phosphofructo-2-kinase activity\", \"id\": \"73316\"}}, {\"position\": {\"x\": -1010.7065475286564, \"y\": -1549.3078270406234}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 853227.0, \"degree_layout\": 2, \"label\": \"PRP21\", \"uniprot\": \"PRP21_YEAST\", \"name\": \"YJL203W\", \"sgd\": \"S000003739\", \"annotation_DB_Object_Name\": \"RNA splicing factor\", \"alias\": \"PRP21, RNA splicing factor, S000003739, SPP91\", \"annotation_GO_CELLULAR_COMPONENT\": \"snRNP U2\", \"SUID\": 73315, \"kegg\": \"sce:YJL203W\", \"shared_name\": \"YJL203W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"nuclear mRNA splicing, via spliceosome\", \"annotation_GO_MOLECULAR_FUNCTION\": \"RNA binding\", \"id\": \"73315\"}}, {\"position\": {\"x\": -677.9131893522067, \"y\": -1855.8698897320826}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855741.0, \"degree_layout\": 2, \"label\": \"ATG3\", \"uniprot\": \"ATG3_YEAST\", \"name\": \"YNR007C\", \"sgd\": \"S000005290\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"APG3, ATG3, AUT1, S000005290\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm\", \"SUID\": 73312, \"kegg\": \"sce:YNR007C\", \"shared_name\": \"YNR007C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"C-terminal protein lipidation, autophagy, protein targeting to vacuole\", \"annotation_GO_MOLECULAR_FUNCTION\": \"APG8 conjugating enzyme activity\", \"id\": \"73312\"}}, {\"position\": {\"x\": 1504.0889943367808, \"y\": 54.65283747078439}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 850518.0, \"degree_layout\": 3, \"label\": \"STE2\", \"uniprot\": \"STE2_YEAST\", \"name\": \"YFL026W\", \"sgd\": \"S000001868\", \"annotation_DB_Object_Name\": \"G protein coupled receptor (GPCR), alpha-factor pheromone receptor\", \"alias\": \"alpha-factor pheromone receptor, G protein coupled receptor (GPCR), S000001868, STE2\", \"annotation_GO_CELLULAR_COMPONENT\": \"integral to plasma membrane\", \"SUID\": 73309, \"kegg\": \"sce:YFL026W\", \"shared_name\": \"YFL026W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"cell projection biogenesis, response to pheromone during conjugation with cellular fusion\", \"annotation_GO_MOLECULAR_FUNCTION\": \"mating-type alpha-factor pheromone receptor activity\", \"id\": \"73309\"}}, {\"position\": {\"x\": 982.858888740852, \"y\": 642.4251176733758}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 853283.0, \"degree_layout\": 4, \"label\": \"FAR1\", \"uniprot\": \"FAR1_YEAST\", \"name\": \"YJL157C\", \"sgd\": \"S000003693\", \"annotation_DB_Object_Name\": \"Cdc28p kinase inhibitor\", \"alias\": \"Cdc28p kinase inhibitor, FAR1, S000003693\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, mating projection tip, membrane, nucleus\", \"SUID\": 73307, \"kegg\": \"sce:YJL157C\", \"shared_name\": \"YJL157C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"cell cycle arrest, pheromone-dependent signal transduction during conjugation with cellular fusion\", \"annotation_GO_MOLECULAR_FUNCTION\": \"cyclin-dependent protein kinase inhibitor activity\", \"id\": \"73307\"}}, {\"position\": {\"x\": 1536.0060909334545, \"y\": -13.981908469567944}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855577.0, \"degree_layout\": 3, \"label\": \"MFA2\", \"uniprot\": \"MFA2_YEAST\", \"name\": \"YNL145W\", \"sgd\": \"S000005089\", \"annotation_DB_Object_Name\": \"a-factor mating pheromone precursor\", \"alias\": \"MFA2, S000005089, a-factor mating pheromone precursor\", \"annotation_GO_CELLULAR_COMPONENT\": \"extracellular region\", \"SUID\": 73305, \"kegg\": \"sce:YNL145W\", \"shared_name\": \"YNL145W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"pheromone-dependent signal transduction during conjugation with cellular fusion\", \"annotation_GO_MOLECULAR_FUNCTION\": \"mating pheromone activity\", \"id\": \"73305\"}}, {\"position\": {\"x\": 1520.480542345181, \"y\": 20.536821603094094}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852072.0, \"degree_layout\": 3, \"label\": \"MFA1\", \"uniprot\": \"MFA1_YEAST\", \"name\": \"YDR461W\", \"sgd\": \"S000002869\", \"annotation_DB_Object_Name\": \"a-factor mating pheromone precursor\", \"alias\": \"MFA1, S000002869, a-factor mating pheromone precursor\", \"annotation_GO_CELLULAR_COMPONENT\": \"extracellular region, soluble fraction\", \"SUID\": 73303, \"kegg\": \"sce:YDR461W\", \"shared_name\": \"YDR461W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"pheromone-dependent signal transduction during conjugation with cellular fusion\", \"annotation_GO_MOLECULAR_FUNCTION\": \"mating pheromone activity\", \"id\": \"73303\"}}, {\"position\": {\"x\": 1550.655754913156, \"y\": -48.881374512445916}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 853002.0, \"degree_layout\": 3, \"label\": \"CG21\", \"uniprot\": \"CG21_YEAST\", \"name\": \"YGR108W\", \"sgd\": \"S000003340\", \"annotation_DB_Object_Name\": \"B-type cyclin\", \"alias\": \"B-type cyclin, CLB1, S000003340, SCB1\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, nucleus\", \"SUID\": 73301, \"kegg\": \"sce:YGR108W\", \"shared_name\": \"YGR108W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"G2/M transition of mitotic cell cycle, meiotic G2/MI transition, mitotic spindle organization and biogenesis in nucleus, regulation of cyclin-dependent protein kinase activity\", \"annotation_GO_MOLECULAR_FUNCTION\": \"cyclin-dependent protein kinase regulator activity\", \"id\": \"73301\"}}, {\"position\": {\"x\": 1090.2939112725655, \"y\": -1788.9103624628635}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 853972.0, \"degree_layout\": 2, \"label\": \"PCKA\", \"uniprot\": \"PCKA_YEAST\", \"name\": \"YKR097W\", \"sgd\": \"S000001805\", \"annotation_DB_Object_Name\": \"phosphoenolpyruvate carboxylkinase\", \"alias\": \"JPM2, PCK1, PPC1, S000001805, phosphoenolpyruvate carboxylkinase\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytosol\", \"SUID\": 73299, \"kegg\": \"sce:YKR097W\", \"shared_name\": \"YKR097W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"gluconeogenesis\", \"annotation_GO_MOLECULAR_FUNCTION\": \"phosphoenolpyruvate carboxykinase (ATP) activity\", \"id\": \"73299\"}}, {\"position\": {\"x\": 103.5908849777019, \"y\": -2110.886510796679}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 853281.0, \"degree_layout\": 2, \"label\": \"HS150\", \"uniprot\": \"HS150_YEAST\", \"name\": \"YJL159W\", \"sgd\": \"S000003695\", \"annotation_DB_Object_Name\": \"heat shock protein, secretory glycoprotein\", \"alias\": \"secretory glycoprotein, CCW7, HSP150, ORE1, PIR2, S000003695, heat shock protein\", \"annotation_GO_CELLULAR_COMPONENT\": \"cell wall (sensu the Fungi research community)\", \"SUID\": 73297, \"kegg\": \"sce:YJL159W\", \"shared_name\": \"YJL159W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"cell wall organization and biogenesis\", \"annotation_GO_MOLECULAR_FUNCTION\": \"structural constituent of cell wall\", \"id\": \"73297\"}}, {\"position\": {\"x\": 1398.9492600028582, \"y\": -1458.0575353203665}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854797.0, \"degree_layout\": 2, \"label\": \"BAR1\", \"uniprot\": \"BAR1_YEAST\", \"name\": \"YIL015W\", \"sgd\": \"S000001277\", \"annotation_DB_Object_Name\": \"protease\", \"alias\": \"BAR1, S000001277, SST1, protease\", \"annotation_GO_CELLULAR_COMPONENT\": \"periplasmic space (sensu the Fungi research community)\", \"SUID\": 73295, \"kegg\": \"sce:YIL015W\", \"shared_name\": \"YIL015W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"protein catabolic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"aspartic-type endopeptidase activity\", \"id\": \"73295\"}}, {\"position\": {\"x\": 160.3531000542072, \"y\": 888.0391214278181}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855060.0, \"degree_layout\": 18, \"label\": \"MCM1\", \"uniprot\": \"MCM1_YEAST\", \"name\": \"YMR043W\", \"sgd\": \"S000004646\", \"annotation_DB_Object_Name\": \"transcription factor\", \"alias\": \"FUN80, MCM1, S000004646, transcription factor\", \"annotation_GO_CELLULAR_COMPONENT\": \"nuclear chromatin, nucleus\", \"SUID\": 73294, \"kegg\": \"sce:YMR043W\", \"shared_name\": \"YMR043W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"DNA replication initiation, regulation of transcription from RNA polymerase II promoter\", \"annotation_GO_MOLECULAR_FUNCTION\": \"DNA bending activity, DNA binding, DNA replication origin binding, RNA polymerase II transcription factor activity\", \"id\": \"73294\"}}, {\"position\": {\"x\": 1134.1653521379565, \"y\": 528.955287362711}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 853751.0, \"degree_layout\": 4, \"label\": \"HAP4\", \"uniprot\": \"HAP4_YEAST\", \"name\": \"YKL109W\", \"sgd\": \"S000001592\", \"annotation_DB_Object_Name\": \"transcriptional activator protein of CYC1 (component of HAP2/HAP3 heteromer)\", \"alias\": \"HAP4, S000001592, transcriptional activator protein of CYC1 (component of HAP2/HAP3 heteromer)\", \"annotation_GO_CELLULAR_COMPONENT\": \"CCAAT-binding factor complex\", \"SUID\": 73289, \"kegg\": \"sce:YKL109W\", \"shared_name\": \"YKL109W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"regulation of carbohydrate metabolic process, transcription\", \"annotation_GO_MOLECULAR_FUNCTION\": \"transcriptional activator activity\", \"id\": \"73289\"}}, {\"position\": {\"x\": -709.0313912946486, \"y\": -1834.323593236733}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852518.0, \"degree_layout\": 2, \"label\": \"ATG12\", \"uniprot\": \"ATG12_YEAST\", \"name\": \"YBR217W\", \"sgd\": \"S000000421\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"APG12, ATG12, S000000421\", \"annotation_GO_CELLULAR_COMPONENT\": \"membrane fraction\", \"SUID\": 73287, \"kegg\": \"sce:YBR217W\", \"shared_name\": \"YBR217W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"autophagy, protein targeting to vacuole\", \"annotation_GO_MOLECULAR_FUNCTION\": \"protein tag\", \"id\": \"73287\"}}, {\"position\": {\"x\": 1644.591657683701, \"y\": -828.8385031578478}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856576.0, \"degree_layout\": 3, \"label\": \"ATG7\", \"uniprot\": \"ATG7_YEAST\", \"name\": \"YHR171W\", \"sgd\": \"S000001214\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"APG7, ATG7, CVT2, S000001214\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, cytosol, membrane, mitochondrion\", \"SUID\": 73285, \"kegg\": \"sce:YHR171W\", \"shared_name\": \"YHR171W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"C-terminal protein lipidation, autophagy, protein modification, protein targeting to vacuole\", \"annotation_GO_MOLECULAR_FUNCTION\": \"APG12 activating enzyme activity, APG8 activating enzyme activity\", \"id\": \"73285\"}}, {\"position\": {\"x\": -739.5960521188358, \"y\": -1811.9990127591839}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855954.0, \"degree_layout\": 2, \"label\": \"ATG5\", \"uniprot\": \"ATG5_YEAST\", \"name\": \"YPL149W\", \"sgd\": \"S000006070\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"APG5, ATG5, S000006070\", \"annotation_GO_CELLULAR_COMPONENT\": \"autophagic vacuole, cytosol, pre-autophagosomal structure\", \"SUID\": 73284, \"kegg\": \"sce:YPL149W\", \"shared_name\": \"YPL149W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"autophagy, protein targeting to vacuole\", \"annotation_GO_MOLECULAR_FUNCTION\": \"molecular_function\", \"id\": \"73284\"}}, {\"position\": {\"x\": -322.926003878452, \"y\": 808.0536663188366}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 853840.0, \"degree_layout\": 1, \"label\": \"T2EA\", \"uniprot\": \"T2EA_YEAST\", \"name\": \"YKL028W\", \"sgd\": \"S000001511\", \"annotation_DB_Object_Name\": \"transcription factor tfIIE large subunit\", \"alias\": \"S000001511, TFA1, transcription factor tfIIE large subunit\", \"annotation_GO_CELLULAR_COMPONENT\": \"mitochondrion, transcription factor TFIIE complex\", \"SUID\": 73282, \"kegg\": \"sce:YKL028W\", \"shared_name\": \"YKL028W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"transcription initiation from RNA polymerase II promoter\", \"annotation_GO_MOLECULAR_FUNCTION\": \"general RNA polymerase II transcription factor activity\", \"id\": \"73282\"}}, {\"position\": {\"x\": -986.6835388715546, \"y\": -1578.5564242694975}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851906.0, \"degree_layout\": 2, \"label\": \"TFB1\", \"uniprot\": \"TFB1_YEAST\", \"name\": \"YDR311W\", \"sgd\": \"S000002719\", \"annotation_DB_Object_Name\": \"transcription initiation factor IIb, 75 kDa subunit component\", \"alias\": \"75 kDa subunit component, S000002719, TFB1, transcription initiation factor IIb\", \"annotation_GO_CELLULAR_COMPONENT\": \"nucleotide-excision repair factor 3 complex, transcription factor TFIIH complex\", \"SUID\": 73281, \"kegg\": \"sce:YDR311W\", \"shared_name\": \"YDR311W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"negative regulation of transcription from RNA polymerase II promoter, mitotic, nucleotide-excision repair, nucleotide-excision repair, DNA duplex unwinding, transcription initiation from RNA polymerase II promoter\", \"annotation_GO_MOLECULAR_FUNCTION\": \"general RNA polymerase II transcription factor activity\", \"id\": \"73281\"}}, {\"position\": {\"x\": 869.012452773714, \"y\": -1934.0054775941549}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852260.0, \"degree_layout\": 2, \"label\": \"HAP3\", \"uniprot\": \"HAP3_YEAST\", \"name\": \"YBL021C\", \"sgd\": \"S000000117\", \"annotation_DB_Object_Name\": \"transcriptional activator protein of CYC1 (component of HAP2/HAP3 heteromer)\", \"alias\": \"HAP3, S000000117, transcriptional activator protein of CYC1 (component of HAP2/HAP3 heteromer)\", \"annotation_GO_CELLULAR_COMPONENT\": \"CCAAT-binding factor complex, nucleus\", \"SUID\": 73279, \"kegg\": \"sce:YBL021C\", \"shared_name\": \"YBL021C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"regulation of carbohydrate metabolic process, transcription\", \"annotation_GO_MOLECULAR_FUNCTION\": \"transcriptional activator activity\", \"id\": \"73279\"}}, {\"position\": {\"x\": 835.4303446109894, \"y\": -1951.4647844573503}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852614.0, \"degree_layout\": 2, \"label\": \"HAP2\", \"uniprot\": \"HAP2_YEAST\", \"name\": \"YGL237C\", \"sgd\": \"S000003206\", \"annotation_DB_Object_Name\": \"transcriptional activator protein of CYC1 (component of HAP2/HAP3 heteromer)\", \"alias\": \"HAP2, S000003206, transcriptional activator protein of CYC1 (component of HAP2/HAP3 heteromer)\", \"annotation_GO_CELLULAR_COMPONENT\": \"CCAAT-binding factor complex, nucleus\", \"SUID\": 73277, \"kegg\": \"sce:YGL237C\", \"shared_name\": \"YGL237C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"regulation of carbohydrate metabolic process, transcription\", \"annotation_GO_MOLECULAR_FUNCTION\": \"transcriptional activator activity\", \"id\": \"73277\"}}, {\"position\": {\"x\": -1321.0310879295457, \"y\": -376.37461498341366}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856672.0, \"degree_layout\": 1, \"label\": \"CYC7\", \"uniprot\": \"CYC7_YEAST\", \"name\": \"YEL039C\", \"sgd\": \"S000000765\", \"annotation_DB_Object_Name\": \"iso-2-cytochrome c\", \"alias\": \"CYC7, S000000765, iso-2-cytochrome c\", \"annotation_GO_CELLULAR_COMPONENT\": \"mitochondrial intermembrane space, mitochondrion\", \"SUID\": 73275, \"kegg\": \"sce:YEL039C\", \"shared_name\": \"YEL039C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"electron transport\", \"annotation_GO_MOLECULAR_FUNCTION\": \"electron carrier activity\", \"id\": \"73275\"}}, {\"position\": {\"x\": 852.2764697343156, \"y\": 718.9193002908607}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 853507.0, \"degree_layout\": 5, \"label\": \"CYC1\", \"uniprot\": \"CYC1_YEAST\", \"name\": \"YJR048W\", \"sgd\": \"S000003809\", \"annotation_DB_Object_Name\": \"iso-1-cytochrome c\", \"alias\": \"CYC1, S000003809, iso-1-cytochrome c\", \"annotation_GO_CELLULAR_COMPONENT\": \"mitochondrial intermembrane space, mitochondrion\", \"SUID\": 73273, \"kegg\": \"sce:YJR048W\", \"shared_name\": \"YJR048W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"electron transport\", \"annotation_GO_MOLECULAR_FUNCTION\": \"electron carrier activity\", \"id\": \"73273\"}}, {\"position\": {\"x\": 801.4184116508601, \"y\": -1968.0712230012355}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854950.0, \"degree_layout\": 2, \"label\": \"CYB2\", \"uniprot\": \"CYB2_YEAST\", \"name\": \"YML054C\", \"sgd\": \"S000004518\", \"annotation_DB_Object_Name\": \"L-lactate cytochrome c oxidoreductase, cytochrome b2\", \"alias\": \"cytochrome b2, CYB2, L-lactate cytochrome c oxidoreductase, S000004518\", \"annotation_GO_CELLULAR_COMPONENT\": \"mitochondrial intermembrane space, mitochondrion\", \"SUID\": 73271, \"kegg\": \"sce:YML054C\", \"shared_name\": \"YML054C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"electron transport\", \"annotation_GO_MOLECULAR_FUNCTION\": \"L-lactate dehydrogenase (cytochrome) activity\", \"id\": \"73271\"}}, {\"position\": {\"x\": 1162.6417904238008, \"y\": 504.02181894476627}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 850958.0, \"degree_layout\": 4, \"label\": \"HAP1\", \"uniprot\": \"HAP1_YEAST\", \"name\": \"YLR256W\", \"sgd\": \"S000004246\", \"annotation_DB_Object_Name\": \"zinc finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type\", \"alias\": \"CYP1, HAP1, S000004246, zinc finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type\", \"annotation_GO_CELLULAR_COMPONENT\": \"nucleus\", \"SUID\": 73270, \"kegg\": \"sce:YLR256W\", \"shared_name\": \"YLR256W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"aerobic respiration, positive regulation of transcription from RNA polymerase II promoter\", \"annotation_GO_MOLECULAR_FUNCTION\": \"specific RNA polymerase II transcription factor activity\", \"id\": \"73270\"}}, {\"position\": {\"x\": 66.600729716881, \"y\": 2118.2328950083024}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854479.0, \"degree_layout\": 2, \"label\": \"CARA\", \"uniprot\": \"CARA_YEAST\", \"name\": \"YOR303W\", \"sgd\": \"S000005829\", \"annotation_DB_Object_Name\": \"carbamoyl phosphate synthetase\", \"alias\": \"CPA1, S000005829, carbamoyl phosphate synthetase\", \"annotation_GO_CELLULAR_COMPONENT\": \"carbamoyl-phosphate synthase complex\", \"SUID\": 73268, \"kegg\": \"sce:YOR303W\", \"shared_name\": \"YOR303W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"arginine biosynthetic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity\", \"id\": \"73268\"}}, {\"position\": {\"x\": -20.001810661562843, \"y\": 1968.232895008302}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 853573.0, \"degree_layout\": 1, \"label\": \"CARB\", \"uniprot\": \"CARB_YEAST\", \"name\": \"YJR109C\", \"sgd\": \"S000003870\", \"annotation_DB_Object_Name\": \"carbamyl phosphate synthetase\", \"alias\": \"CPA2, S000003870, carbamyl phosphate synthetase\", \"annotation_GO_CELLULAR_COMPONENT\": \"carbamoyl-phosphate synthase complex\", \"SUID\": 73267, \"kegg\": \"sce:YJR109C\", \"shared_name\": \"YJR109C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"arginine biosynthetic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity\", \"id\": \"73267\"}}, {\"position\": {\"x\": -232.44362738700224, \"y\": -2059.6178582850816}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852949.0, \"degree_layout\": 2, \"label\": \"PEF1\", \"uniprot\": \"PEF1_YEAST\", \"name\": \"YGR058W\", \"sgd\": \"S000003290\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"S000003290\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, nucleus\", \"SUID\": 73265, \"kegg\": \"sce:YGR058W\", \"shared_name\": \"YGR058W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"biological_process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"molecular_function\", \"id\": \"73265\"}}, {\"position\": {\"x\": -910.296068976501, \"y\": -1662.5370808792084}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 850930.0, \"degree_layout\": 2, \"label\": \"CDC42\", \"uniprot\": \"CDC42_YEAST\", \"name\": \"YLR229C\", \"sgd\": \"S000004219\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"CDC42, S000004219\", \"annotation_GO_CELLULAR_COMPONENT\": \"bud neck, bud tip, mating projection tip, plasma membrane, soluble fraction\", \"SUID\": 73263, \"kegg\": \"sce:YLR229C\", \"shared_name\": \"YLR229C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"Rho protein signal transduction, budding cell apical bud growth, budding cell isotropic bud growth, establishment of cell polarity (sensu the Fungi research community), exocytosis, invasive growth (sensu the Saccharomyces research community), pheromone-dependent signal transduction during conjugation with cellular fusion, pseudohyphal growth, regulation of exit from mitosis, regulation of initiation of mating projection growth\", \"annotation_GO_MOLECULAR_FUNCTION\": \"GTPase activity, signal transducer activity\", \"id\": \"73263\"}}, {\"position\": {\"x\": -393.94464635692873, \"y\": 781.8662299041655}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851904.0, \"degree_layout\": 1, \"label\": \"GIC2\", \"uniprot\": \"GIC2_YEAST\", \"name\": \"YDR309C\", \"sgd\": \"S000002717\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"GIC2, S000002717\", \"annotation_GO_CELLULAR_COMPONENT\": \"actin cap, bud tip, incipient bud site, mating projection tip\", \"SUID\": 73262, \"kegg\": \"sce:YDR309C\", \"shared_name\": \"YDR309C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"Rho protein signal transduction, axial bud site selection, establishment of cell polarity (sensu the Fungi research community), regulation of exit from mitosis\", \"annotation_GO_MOLECULAR_FUNCTION\": \"small GTPase regulator activity\", \"id\": \"73262\"}}, {\"position\": {\"x\": -195.79274907605836, \"y\": -2069.0676468452834}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854437.0, \"degree_layout\": 2, \"label\": \"DSE3\", \"uniprot\": \"DSE3_YEAST\", \"name\": \"YOR264W\", \"sgd\": \"S000005790\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"DSE3, S000005790\", \"annotation_GO_CELLULAR_COMPONENT\": \"bud neck\", \"SUID\": 73260, \"kegg\": \"sce:YOR264W\", \"shared_name\": \"YOR264W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"biological_process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"molecular_function\", \"id\": \"73260\"}}, {\"position\": {\"x\": 254.91663459114002, \"y\": -2108.977157019374}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 850807.0, \"degree_layout\": 2, \"label\": \"BBP\", \"uniprot\": \"BBP_YEAST\", \"name\": \"YLR116W\", \"sgd\": \"S000004106\", \"annotation_DB_Object_Name\": \"BBP\", \"alias\": \"BBP, MSL5, S000004106\", \"annotation_GO_CELLULAR_COMPONENT\": \"commitment complex\", \"SUID\": 73258, \"kegg\": \"sce:YLR116W\", \"shared_name\": \"YLR116W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"nuclear mRNA splicing, via spliceosome\", \"annotation_GO_MOLECULAR_FUNCTION\": \"RNA binding\", \"id\": \"73258\"}}, {\"position\": {\"x\": 1060.302252227251, \"y\": -1811.9990127591832}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855404.0, \"degree_layout\": 2, \"label\": \"RFA2\", \"uniprot\": \"RFA2_YEAST\", \"name\": \"YNL312W\", \"sgd\": \"S000005256\", \"annotation_DB_Object_Name\": \"replication factor RF-A subunit 2\", \"alias\": \"BUF1, RFA2, RPA2, S000005256, replication factor RF-A subunit 2\", \"annotation_GO_CELLULAR_COMPONENT\": \"DNA replication factor A complex, chromosome, telomeric region\", \"SUID\": 73256, \"kegg\": \"sce:YNL312W\", \"shared_name\": \"YNL312W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"DNA recombination, DNA replication, synthesis of RNA primer, DNA strand elongation during DNA replication, DNA unwinding during replication, double-strand break repair via homologous recombination, nucleotide-excision repair, postreplication repair\", \"annotation_GO_MOLECULAR_FUNCTION\": \"DNA binding\", \"id\": \"73256\"}}, {\"position\": {\"x\": 1029.7375914030638, \"y\": -1834.3235932367324}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854976.0, \"degree_layout\": 2, \"label\": \"RAD52\", \"uniprot\": \"RAD52_YEAST\", \"name\": \"YML032C\", \"sgd\": \"S000004494\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"RAD52, S000004494\", \"annotation_GO_CELLULAR_COMPONENT\": \"nuclear chromosome, nucleus\", \"SUID\": 73255, \"kegg\": \"sce:YML032C\", \"shared_name\": \"YML032C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"DNA recombinase assembly, double-strand break repair via break-induced replication, double-strand break repair via single-strand annealing, double-strand break repair via synthesis-dependent strand annealing, meiotic DNA recombinase assembly, postreplication repair, telomere maintenance via recombination\", \"annotation_GO_MOLECULAR_FUNCTION\": \"DNA strand annealing activity, recombinase activity\", \"id\": \"73255\"}}, {\"position\": {\"x\": 1657.9361332976343, \"y\": -526.8429689325708}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 853857.0, \"degree_layout\": 3, \"label\": \"PRP40\", \"uniprot\": \"PRP40_YEAST\", \"name\": \"YKL012W\", \"sgd\": \"S000001495\", \"annotation_DB_Object_Name\": \"U1 snRNP protein\", \"alias\": \"PRP40, S000001495, U1 snRNP protein\", \"annotation_GO_CELLULAR_COMPONENT\": \"snRNP U1\", \"SUID\": 73253, \"kegg\": \"sce:YKL012W\", \"shared_name\": \"YKL012W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"nuclear mRNA splicing, via spliceosome\", \"annotation_GO_MOLECULAR_FUNCTION\": \"RNA binding\", \"id\": \"73253\"}}, {\"position\": {\"x\": 217.11531513071273, \"y\": -2110.886510796679}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855485.0, \"degree_layout\": 2, \"label\": \"MED16\", \"uniprot\": \"MED16_YEAST\", \"name\": \"YNL236W\", \"sgd\": \"S000005180\", \"annotation_DB_Object_Name\": \"RNA polymerase II holoenzyme/mediator subunit\", \"alias\": \"BEL2, GAL22, MED16, RNA polymerase II holoenzyme/mediator subunit, RYE1, S000005180, SDI3, SIN4, SSF5, SSN4, TSF3\", \"annotation_GO_CELLULAR_COMPONENT\": \"mediator complex\", \"SUID\": 73252, \"kegg\": \"sce:YNL236W\", \"shared_name\": \"YNL236W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"transcription from RNA polymerase II promoter\", \"annotation_GO_MOLECULAR_FUNCTION\": \"RNA polymerase II transcription mediator activity\", \"id\": \"73252\"}}, {\"position\": {\"x\": 1468.7501910974981, \"y\": 121.5901095325683}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855633.0, \"degree_layout\": 3, \"label\": \"NST1\", \"uniprot\": \"NST1_YEAST\", \"name\": \"YNL091W\", \"sgd\": \"S000005035\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"NST1, S000005035\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm\", \"SUID\": 73250, \"kegg\": \"sce:YNL091W\", \"shared_name\": \"YNL091W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"response to salt stress\", \"annotation_GO_MOLECULAR_FUNCTION\": \"molecular_function\", \"id\": \"73250\"}}, {\"position\": {\"x\": 1512.3923788295435, \"y\": -1261.5682897434747}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851765.0, \"degree_layout\": 2, \"label\": \"LIC4\", \"uniprot\": \"LIC4_YEAST\", \"name\": \"YDR184C\", \"sgd\": \"S000002592\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"ATC1, LIC4, S000002592\", \"annotation_GO_CELLULAR_COMPONENT\": \"nucleus\", \"SUID\": 73248, \"kegg\": \"sce:YDR184C\", \"shared_name\": \"YDR184C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"bipolar bud site selection, response to stress, telomere maintenance\", \"annotation_GO_MOLECULAR_FUNCTION\": \"molecular_function\", \"id\": \"73248\"}}, {\"position\": {\"x\": -961.9302066923407, \"y\": -1607.1895856531391}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854663.0, \"degree_layout\": 2, \"label\": \"RAD25\", \"uniprot\": \"RAD25_YEAST\", \"name\": \"YIL143C\", \"sgd\": \"S000001405\", \"annotation_DB_Object_Name\": \"DNA helicase\", \"alias\": \"DNA helicase, LOM3, RAD25, S000001405, SSL2\", \"annotation_GO_CELLULAR_COMPONENT\": \"nucleotide-excision repair factor 3 complex, transcription factor TFIIH complex\", \"SUID\": 73246, \"kegg\": \"sce:YIL143C\", \"shared_name\": \"YIL143C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"negative regulation of transcription from RNA polymerase II promoter, mitotic, nucleotide-excision repair, DNA duplex unwinding, transcription initiation from RNA polymerase II promoter\", \"annotation_GO_MOLECULAR_FUNCTION\": \"DNA helicase activity, general RNA polymerase II transcription factor activity\", \"id\": \"73246\"}}, {\"position\": {\"x\": 1635.3216093840413, \"y\": -339.07281271856544}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 853974.0, \"degree_layout\": 3, \"label\": \"BAS1\", \"uniprot\": \"BAS1_YEAST\", \"name\": \"YKR099W\", \"sgd\": \"S000001807\", \"annotation_DB_Object_Name\": \"transcription factor\", \"alias\": \"BAS1, S000001807, transcription factor\", \"annotation_GO_CELLULAR_COMPONENT\": \"nucleus\", \"SUID\": 73244, \"kegg\": \"sce:YKR099W\", \"shared_name\": \"YKR099W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"histidine biosynthetic process, purine base biosynthetic process, transcription from RNA polymerase II promoter\", \"annotation_GO_MOLECULAR_FUNCTION\": \"RNA polymerase II transcription factor activity\", \"id\": \"73244\"}}, {\"position\": {\"x\": 714.6508464653426, \"y\": 781.866229904166}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854826.0, \"degree_layout\": 5, \"label\": \"MSL1\", \"uniprot\": \"MSL1_YEAST\", \"name\": \"YIR009W\", \"sgd\": \"S000001448\", \"annotation_DB_Object_Name\": \"U2 snRNP component, YU2B''\", \"alias\": \"YU2B'', MSL1, S000001448, U2 snRNP component, YIB9, YIB9w\", \"annotation_GO_CELLULAR_COMPONENT\": \"snRNP U2\", \"SUID\": 73243, \"kegg\": \"sce:YIR009W\", \"shared_name\": \"YIR009W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"nuclear mRNA splicing, via spliceosome\", \"annotation_GO_MOLECULAR_FUNCTION\": \"RNA binding\", \"id\": \"73243\"}}, {\"position\": {\"x\": 966.9674595027255, \"y\": -1876.6241836188083}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852306.0, \"degree_layout\": 2, \"label\": \"GAL7\", \"uniprot\": \"GAL7_YEAST\", \"name\": \"YBR018C\", \"sgd\": \"S000000222\", \"annotation_DB_Object_Name\": \"galactose-1-phosphate uridyl transferase\", \"alias\": \"GAL7, S000000222, galactose-1-phosphate uridyl transferase\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm\", \"SUID\": 73241, \"kegg\": \"sce:YBR018C\", \"shared_name\": \"YBR018C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"galactose catabolic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"UTP:galactose-1-phosphate uridylyltransferase activity\", \"id\": \"73241\"}}, {\"position\": {\"x\": 273.7962188808923, \"y\": 883.743189347296}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855828.0, \"degree_layout\": 11, \"label\": \"GAL4\", \"uniprot\": \"GAL4_YEAST\", \"name\": \"YPL248C\", \"sgd\": \"S000006169\", \"annotation_DB_Object_Name\": \"zinc finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type\", \"alias\": \"GAL4, GAL81, S000006169, zinc finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type\", \"annotation_GO_CELLULAR_COMPONENT\": \"nucleus\", \"SUID\": 73239, \"kegg\": \"sce:YPL248C\", \"shared_name\": \"YPL248C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"galactose metabolic process, positive regulation of transcription by galactose\", \"annotation_GO_MOLECULAR_FUNCTION\": \"transcription factor activity, transcriptional activator activity\", \"id\": \"73239\"}}, {\"position\": {\"x\": 934.8019544592681, \"y\": -1896.573260542202}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 850770.0, \"degree_layout\": 2, \"label\": \"GAL2\", \"uniprot\": \"GAL2_YEAST\", \"name\": \"YLR081W\", \"sgd\": \"S000004071\", \"annotation_DB_Object_Name\": \"galactose permease\", \"alias\": \"GAL2, S000004071, galactose permease\", \"annotation_GO_CELLULAR_COMPONENT\": \"plasma membrane\", \"SUID\": 73237, \"kegg\": \"sce:YLR081W\", \"shared_name\": \"YLR081W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"galactose metabolic process, galactose transport\", \"annotation_GO_MOLECULAR_FUNCTION\": \"galactose transporter activity, glucose transporter activity\", \"id\": \"73237\"}}, {\"position\": {\"x\": 1075.370909155906, \"y\": 576.627531697213}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852308.0, \"degree_layout\": 4, \"label\": \"GAL1\", \"uniprot\": \"GAL1_YEAST\", \"name\": \"YBR020W\", \"sgd\": \"S000000224\", \"annotation_DB_Object_Name\": \"galactokinase\", \"alias\": \"GAL1, S000000224, galactokinase\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm\", \"SUID\": 73235, \"kegg\": \"sce:YBR020W\", \"shared_name\": \"YBR020W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"galactose catabolic process, galactose transport, positive regulation of transcription by galactose\", \"annotation_GO_MOLECULAR_FUNCTION\": \"galactokinase activity, transcription regulator activity\", \"id\": \"73235\"}}, {\"position\": {\"x\": 236.02199744262512, \"y\": 886.1293116259988}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852848.0, \"degree_layout\": 11, \"label\": \"MIG1\", \"uniprot\": \"MIG1_YEAST\", \"name\": \"YGL035C\", \"sgd\": \"S000003003\", \"annotation_DB_Object_Name\": \"C2H2 zinc finger protein that resembles the mammalian Egr and Wilms tumour proteins\", \"alias\": \"C2H2 zinc finger protein that resembles the mammalian Egr and Wilms tumour proteins, CAT4, MIG1, S000003003, SSN1, TDS22\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, nucleus\", \"SUID\": 73233, \"kegg\": \"sce:YGL035C\", \"shared_name\": \"YGL035C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"glucose metabolic process, regulation of transcription from RNA polymerase II promoter\", \"annotation_GO_MOLECULAR_FUNCTION\": \"specific RNA polymerase II transcription factor activity\", \"id\": \"73233\"}}, {\"position\": {\"x\": 818.4767590118546, \"y\": 735.9535287698416}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854106.0, \"degree_layout\": 5, \"label\": \"MED15\", \"uniprot\": \"MED15_YEAST\", \"name\": \"YOL051W\", \"sgd\": \"S000005411\", \"annotation_DB_Object_Name\": \"RNA polymerase II holoenzyme complex component, positive and negative transcriptional regulator of genes involved in mating-type specialization\", \"alias\": \"positive and negative transcriptional regulator of genes involved in mating-type specialization, ABE1, GAL11, MED15, RAR3, RNA polymerase II holoenzyme complex component, S000005411, SDS4, SPT13\", \"annotation_GO_CELLULAR_COMPONENT\": \"mediator complex\", \"SUID\": 73231, \"kegg\": \"sce:YOL051W\", \"shared_name\": \"YOL051W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"telomere maintenance, transcription from RNA polymerase II promoter\", \"annotation_GO_MOLECULAR_FUNCTION\": \"RNA polymerase II transcription mediator activity\", \"id\": \"73231\"}}, {\"position\": {\"x\": 1647.2097625421131, \"y\": -413.82641610962804}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852307.0, \"degree_layout\": 3, \"label\": \"GAL10\", \"uniprot\": \"GAL10_YEAST\", \"name\": \"YBR019C\", \"sgd\": \"S000000223\", \"annotation_DB_Object_Name\": \"UDP-glucose 4-epimerase\", \"alias\": \"GAL10, S000000223, UDP-glucose 4-epimerase\", \"annotation_GO_CELLULAR_COMPONENT\": \"soluble fraction\", \"SUID\": 73230, \"kegg\": \"sce:YBR019C\", \"shared_name\": \"YBR019C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"galactose catabolic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"UDP-glucose 4-epimerase activity, aldose 1-epimerase activity\", \"id\": \"73230\"}}, {\"position\": {\"x\": 625.6781211029726, \"y\": -2037.9596951165597}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 853523.0, \"degree_layout\": 2, \"label\": \"CBF1\", \"uniprot\": \"CBF1_YEAST\", \"name\": \"YJR060W\", \"sgd\": \"S000003821\", \"annotation_DB_Object_Name\": \"basic helix-loop-helix protein\", \"alias\": \"CBF1, CEP1, CPF1, S000003821, basic helix-loop-helix protein\", \"annotation_GO_CELLULAR_COMPONENT\": \"kinetochore, mitochondrion, nucleus\", \"SUID\": 73228, \"kegg\": \"sce:YJR060W\", \"shared_name\": \"YJR060W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"chromatin assembly or disassembly, chromosome segregation, methionine biosynthetic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"DNA binding, centromeric DNA binding\", \"id\": \"73228\"}}, {\"position\": {\"x\": 1459.3912057308655, \"y\": -1361.9608785721814}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851680.0, \"degree_layout\": 2, \"label\": \"STE5\", \"uniprot\": \"STE5_YEAST\", \"name\": \"YDR103W\", \"sgd\": \"S000002510\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"HMD3, NUL3, S000002510, STE5\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, mating projection tip, nucleus, plasma membrane\", \"SUID\": 73226, \"kegg\": \"sce:YDR103W\", \"shared_name\": \"YDR103W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"invasive growth (sensu the Saccharomyces research community), pheromone-dependent signal transduction during conjugation with cellular fusion\", \"annotation_GO_MOLECULAR_FUNCTION\": \"MAP-kinase scaffold activity\", \"id\": \"73226\"}}, {\"position\": {\"x\": 311.4982105618095, \"y\": 880.4047453851792}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851076.0, \"degree_layout\": 9, \"label\": \"STE11\", \"uniprot\": \"STE11_YEAST\", \"name\": \"YLR362W\", \"sgd\": \"S000004354\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"S000004354, STE11\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm\", \"SUID\": 73224, \"kegg\": \"sce:YLR362W\", \"shared_name\": \"YLR362W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"invasive growth (sensu the Saccharomyces research community), pheromone-dependent signal transduction during conjugation with cellular fusion, protein amino acid phosphorylation, pseudohyphal growth\", \"annotation_GO_MOLECULAR_FUNCTION\": \"MAP kinase kinase kinase activity, SAM domain binding\", \"id\": \"73224\"}}, {\"position\": {\"x\": -1317.9409078621416, \"y\": -866.2182799563268}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851596.0, \"degree_layout\": 1, \"label\": \"PST2\", \"uniprot\": \"PST2_YEAST\", \"name\": \"YDR032C\", \"sgd\": \"S000002439\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"PST2, S000002439\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, mitochondrion\", \"SUID\": 73222, \"kegg\": \"sce:YDR032C\", \"shared_name\": \"YDR032C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"biological_process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"molecular_function\", \"id\": \"73222\"}}, {\"position\": {\"x\": 950.9476313834945, \"y\": 662.7784230233344}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 850325.0, \"degree_layout\": 4, \"label\": \"STE50\", \"uniprot\": \"STE50_YEAST\", \"name\": \"YCL032W\", \"sgd\": \"S000000537\", \"annotation_DB_Object_Name\": \"protein kinase regulator\", \"alias\": \"S000000537, STE50, protein kinase regulator\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm\", \"SUID\": 73221, \"kegg\": \"sce:YCL032W\", \"shared_name\": \"YCL032W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"MAPKKK cascade during osmolarity sensing, pheromone-dependent signal transduction during conjugation with cellular fusion, response to pheromone, signal transduction during filamentous growth\", \"annotation_GO_MOLECULAR_FUNCTION\": \"SAM domain binding, protein kinase regulator activity\", \"id\": \"73221\"}}, {\"position\": {\"x\": -65.88334568785407, \"y\": 870.8799998156512}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 850799.0, \"degree_layout\": 1, \"label\": \"AHP1\", \"uniprot\": \"AHP1_YEAST\", \"name\": \"YLR109W\", \"sgd\": \"S000004099\", \"annotation_DB_Object_Name\": \"alkyl hydroperoxide reductase, cTPxIII\", \"alias\": \"cTPxIII, AHP1, S000004099, alkyl hydroperoxide reductase\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm\", \"SUID\": 73219, \"kegg\": \"sce:YLR109W\", \"shared_name\": \"YLR109W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"regulation of cell redox homeostasis, response to metal ion, response to oxidative stress\", \"annotation_GO_MOLECULAR_FUNCTION\": \"thioredoxin peroxidase activity\", \"id\": \"73219\"}}, {\"position\": {\"x\": -28.397767344848347, \"y\": 876.1161053423277}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856544.0, \"degree_layout\": 1, \"label\": \"RL44B\", \"uniprot\": \"RL44B_YEAST\", \"name\": \"YHR141C\", \"sgd\": \"S000001183\", \"annotation_DB_Object_Name\": \"ribosomal protein L42B (YL27) (L41B) (YP44)\", \"alias\": \"MAK18, RPL42B, S000001183, ribosomal protein L42B (YL27) (L41B) (YP44)\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytosolic large ribosomal subunit (sensu the Eukaryota research community)\", \"SUID\": 73217, \"kegg\": \"sce:YHR141C\", \"shared_name\": \"YHR141C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"null\", \"annotation_GO_MOLECULAR_FUNCTION\": \"structural constituent of ribosome\", \"id\": \"73217\"}}, {\"position\": {\"x\": 1638.6471079705564, \"y\": -866.2182799563266}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855169.0, \"degree_layout\": 3, \"label\": \"CIN4\", \"uniprot\": \"CIN4_YEAST\", \"name\": \"YMR138W\", \"sgd\": \"S000004746\", \"annotation_DB_Object_Name\": \"GTP-binding protein\", \"alias\": \"CIN4, GTP-binding protein, GTP1, S000004746, UGX1\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm\", \"SUID\": 73216, \"kegg\": \"sce:YMR138W\", \"shared_name\": \"YMR138W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"microtubule-based process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"GTP binding\", \"id\": \"73216\"}}, {\"position\": {\"x\": -1338.9007839945866, \"y\": -564.6555811457256}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855346.0, \"degree_layout\": 1, \"label\": \"PUR1\", \"uniprot\": \"PUR1_YEAST\", \"name\": \"YMR300C\", \"sgd\": \"S000004915\", \"annotation_DB_Object_Name\": \"phosphoribosylpyrophosphate amidotransferase\", \"alias\": \"ADE4, S000004915, phosphoribosylpyrophosphate amidotransferase\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm\", \"SUID\": 73214, \"kegg\": \"sce:YMR300C\", \"shared_name\": \"YMR300C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"'de novo' IMP biosynthetic process, purine base metabolic process, purine nucleotide biosynthetic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"amidophosphoribosyltransferase activity\", \"id\": \"73214\"}}, {\"position\": {\"x\": 1176.6418163326432, \"y\": -1715.209375133645}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854096.0, \"degree_layout\": 2, \"label\": \"ASSY\", \"uniprot\": \"ASSY_YEAST\", \"name\": \"YOL058W\", \"sgd\": \"S000005419\", \"annotation_DB_Object_Name\": \"arginosuccinate synthetase\", \"alias\": \"ARG1, ARG10, S000005419, arginosuccinate synthetase\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytosol\", \"SUID\": 73212, \"kegg\": \"sce:YOL058W\", \"shared_name\": \"YOL058W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"arginine biosynthetic process, argininosuccinate metabolic process, citrulline metabolic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"argininosuccinate synthase activity\", \"id\": \"73212\"}}, {\"position\": {\"x\": -1326.5035624336988, \"y\": -413.82641610962827}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852550.0, \"degree_layout\": 1, \"label\": \"HIS5\", \"uniprot\": \"HIS5_YEAST\", \"name\": \"YBR248C\", \"sgd\": \"S000000452\", \"annotation_DB_Object_Name\": \"imidazole glycerol phosphate synthase\", \"alias\": \"HIS7, S000000452, imidazole glycerol phosphate synthase\", \"annotation_GO_CELLULAR_COMPONENT\": \"intracellular\", \"SUID\": 73210, \"kegg\": \"sce:YBR248C\", \"shared_name\": \"YBR248C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"histidine biosynthetic process, purine nucleoside monophosphate biosynthetic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"imidazoleglycerol-phosphate synthase activity\", \"id\": \"73210\"}}, {\"position\": {\"x\": 1204.1543392420892, \"y\": -1689.2161747159707}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854377.0, \"degree_layout\": 2, \"label\": \"HIS7\", \"uniprot\": \"HIS7_YEAST\", \"name\": \"YOR202W\", \"sgd\": \"S000005728\", \"annotation_DB_Object_Name\": \"imidazoleglycerol-phosphate dehydratase\", \"alias\": \"HIS10, HIS3, S000005728, imidazoleglycerol-phosphate dehydratase\", \"annotation_GO_CELLULAR_COMPONENT\": \"intracellular\", \"SUID\": 73207, \"kegg\": \"sce:YOR202W\", \"shared_name\": \"YOR202W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"histidine biosynthetic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"imidazoleglycerol-phosphate dehydratase activity\", \"id\": \"73207\"}}, {\"position\": {\"x\": -1088.8192596914348, \"y\": 218.44168383204425}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855135.0, \"degree_layout\": 1, \"label\": \"ILVB\", \"uniprot\": \"ILVB_YEAST\", \"name\": \"YMR108W\", \"sgd\": \"S000004714\", \"annotation_DB_Object_Name\": \"acetolactate synthase\", \"alias\": \"ILV2, S000004714, SMR1, THI1, acetolactate synthase\", \"annotation_GO_CELLULAR_COMPONENT\": \"acetolactate synthase complex, mitochondrion\", \"SUID\": 73205, \"kegg\": \"sce:YMR108W\", \"shared_name\": \"YMR108W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"branched chain family amino acid biosynthetic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"FAD binding, acetolactate synthase activity\", \"id\": \"73205\"}}, {\"position\": {\"x\": 423.9310783500838, \"y\": 864.6997626577042}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856709.0, \"degree_layout\": 7, \"label\": \"GCN4\", \"uniprot\": \"GCN4_YEAST\", \"name\": \"YEL009C\", \"sgd\": \"S000000735\", \"annotation_DB_Object_Name\": \"transcriptional activator of amino acid biosynthetic genes\", \"alias\": \"AAS3, ARG9, GCN4, S000000735, transcriptional activator of amino acid biosynthetic genes\", \"annotation_GO_CELLULAR_COMPONENT\": \"nucleus\", \"SUID\": 73204, \"kegg\": \"sce:YEL009C\", \"shared_name\": \"YEL009C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"amino acid biosynthetic process, regulation of transcription from RNA polymerase II promoter, unfolded protein response, positive regulation of target gene transcription\", \"annotation_GO_MOLECULAR_FUNCTION\": \"DNA binding, transcription factor activity\", \"id\": \"73204\"}}, {\"position\": {\"x\": 1631.7613216395569, \"y\": -903.4361698938283}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852452.0, \"degree_layout\": 2, \"label\": \"CNS1\", \"uniprot\": \"CNS1_YEAST\", \"name\": \"YBR155W\", \"sgd\": \"S000000359\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"CNS1, S000000359\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm\", \"SUID\": 73202, \"kegg\": \"sce:YBR155W\", \"shared_name\": \"YBR155W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"protein folding\", \"annotation_GO_MOLECULAR_FUNCTION\": \"Hsp70 protein binding, Hsp90 protein binding\", \"id\": \"73202\"}}, {\"position\": {\"x\": 1477.9009025590587, \"y\": -1328.9460863098564}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855224.0, \"degree_layout\": 2, \"label\": \"HSC82\", \"uniprot\": \"HSC82_YEAST\", \"name\": \"YMR186W\", \"sgd\": \"S000004798\", \"annotation_DB_Object_Name\": \"chaperonin\", \"alias\": \"HSC82, HSP90, S000004798, chaperonin\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, mitochondrion\", \"SUID\": 73201, \"kegg\": \"sce:YMR186W\", \"shared_name\": \"YMR186W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"'de novo' protein folding, proteasome assembly, protein folding, protein refolding, response to stress, telomere maintenance\", \"annotation_GO_MOLECULAR_FUNCTION\": \"ATPase activity, coupled, unfolded protein binding\", \"id\": \"73201\"}}, {\"position\": {\"x\": -541.8775343419715, \"y\": 988.0391214278181}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852772.0, \"degree_layout\": 1, \"label\": \"MLC1\", \"uniprot\": \"MLC1_YEAST\", \"name\": \"YGL106W\", \"sgd\": \"S000003074\", \"annotation_DB_Object_Name\": \"myosin Myo2p light chain\", \"alias\": \"MLC1, S000003074, myosin Myo2p light chain\", \"annotation_GO_CELLULAR_COMPONENT\": \"bud neck, bud tip, vesicle\", \"SUID\": 73199, \"kegg\": \"sce:YGL106W\", \"shared_name\": \"YGL106W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"budding cell apical bud growth, budding cell isotropic bud growth, cytokinesis, cytokinesis, contractile ring formation, endocytosis, establishment of cell polarity (sensu the Fungi research community), membrane addition at site of cytokinesis, mitochondrion inheritance, vacuole inheritance, vesicle-mediated transport\", \"annotation_GO_MOLECULAR_FUNCTION\": \"microfilament motor activity, myosin II heavy chain binding\", \"id\": \"73199\"}}, {\"position\": {\"x\": -469.2232815414353, \"y\": 1211.6459191777972}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854504.0, \"degree_layout\": 2, \"label\": \"MYO2\", \"uniprot\": \"MYO2_YEAST\", \"name\": \"YOR326W\", \"sgd\": \"S000005853\", \"annotation_DB_Object_Name\": \"class V myosin\", \"alias\": \"CDC66, MYO2, S000005853, class V myosin\", \"annotation_GO_CELLULAR_COMPONENT\": \"actin cable, bud neck, bud tip, filamentous actin, incipient bud site, mating projection tip, myosin V complex, vacuolar membrane (sensu the Fungi research community), vesicle\", \"SUID\": 73198, \"kegg\": \"sce:YOR326W\", \"shared_name\": \"YOR326W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"Golgi inheritance, budding cell apical bud growth, establishment of mitotic spindle orientation, membrane addition at site of cytokinesis, mitochondrion inheritance, peroxisome inheritance, unidimensional cell growth, vacuole inheritance, vesicle transport along actin filament, vesicle-mediated transport\", \"annotation_GO_MOLECULAR_FUNCTION\": \"actin filament binding, calmodulin binding, microfilament motor activity\", \"id\": \"73198\"}}, {\"position\": {\"x\": 1589.2589877873404, \"y\": -155.64085490284168}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855357.0, \"degree_layout\": 3, \"label\": \"EIF3C\", \"uniprot\": \"EIF3C_YEAST\", \"name\": \"YMR309C\", \"sgd\": \"S000004926\", \"annotation_DB_Object_Name\": \"translation initiation factor eIF3 subunit\", \"alias\": \"NIP1, S000004926, translation initiation factor eIF3 subunit\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, eukaryotic translation initiation factor 3 complex, multi-eIF complex\", \"SUID\": 73195, \"kegg\": \"sce:YMR309C\", \"shared_name\": \"YMR309C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"translational initiation\", \"annotation_GO_MOLECULAR_FUNCTION\": \"translation initiation factor activity\", \"id\": \"73195\"}}, {\"position\": {\"x\": 1577.2906826308047, \"y\": -119.73340363606184}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854543.0, \"degree_layout\": 3, \"label\": \"EIF3B\", \"uniprot\": \"EIF3B_YEAST\", \"name\": \"YOR361C\", \"sgd\": \"S000005888\", \"annotation_DB_Object_Name\": \"translation initiation factor eIF3 subunit\", \"alias\": \"CDC63, DNA26, PRT1, S000005888, translation initiation factor eIF3 subunit\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, eukaryotic translation initiation factor 3 complex, multi-eIF complex\", \"SUID\": 73194, \"kegg\": \"sce:YOR361C\", \"shared_name\": \"YOR361C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"translational initiation\", \"annotation_GO_MOLECULAR_FUNCTION\": \"translation initiation factor activity\", \"id\": \"73194\"}}, {\"position\": {\"x\": 1282.6364068007554, \"y\": -1607.1895856531385}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854701.0, \"degree_layout\": 2, \"label\": \"SLM1\", \"uniprot\": \"SLM1_YEAST\", \"name\": \"YIL105C\", \"sgd\": \"S000001367\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"LIT2, S000001367, SLM1\", \"annotation_GO_CELLULAR_COMPONENT\": \"TORC 2 complex, cytoplasm, mitochondrion, plasma membrane\", \"SUID\": 73192, \"kegg\": \"sce:YIL105C\", \"shared_name\": \"YIL105C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"actin cable formation, actin cytoskeleton organization and biogenesis, establishment and/or maintenance of actin cytoskeleton polarity, regulation of cell growth\", \"annotation_GO_MOLECULAR_FUNCTION\": \"phosphoinositide binding\", \"id\": \"73192\"}}, {\"position\": {\"x\": -1339.617052932226, \"y\": -602.4983128600863}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 850825.0, \"degree_layout\": 1, \"label\": \"PDC5\", \"uniprot\": \"PDC5_YEAST\", \"name\": \"YLR134W\", \"sgd\": \"S000004124\", \"annotation_DB_Object_Name\": \"pyruvate decarboxylase\", \"alias\": \"PDC5, S000004124, pyruvate decarboxylase\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, nucleus\", \"SUID\": 73190, \"kegg\": \"sce:YLR134W\", \"shared_name\": \"YLR134W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"glucose catabolic process to ethanol, pyruvate metabolic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"pyruvate decarboxylase activity\", \"id\": \"73190\"}}, {\"position\": {\"x\": 1600.3175019700914, \"y\": -191.83884723482123}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856926.0, \"degree_layout\": 3, \"label\": \"DMC1\", \"uniprot\": \"DMC1_YEAST\", \"name\": \"YER179W\", \"sgd\": \"S000000981\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"DMC1, ISC2, S000000981\", \"annotation_GO_CELLULAR_COMPONENT\": \"condensed nuclear chromosome, nucleus\", \"SUID\": 73188, \"kegg\": \"sce:YER179W\", \"shared_name\": \"YER179W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"meiosis, meiotic joint molecule formation, meiotic recombination\", \"annotation_GO_MOLECULAR_FUNCTION\": \"double-stranded DNA binding, single-stranded DNA binding\", \"id\": \"73188\"}}, {\"position\": {\"x\": -666.4119721753384, \"y\": 1968.232895008302}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854487.0, \"degree_layout\": 2, \"label\": \"NOP58\", \"uniprot\": \"NOP58_YEAST\", \"name\": \"YOR310C\", \"sgd\": \"S000005837\", \"annotation_DB_Object_Name\": \"U3 snoRNP protein\", \"alias\": \"NOP5, NOP58, S000005837, U3 snoRNP protein\", \"annotation_GO_CELLULAR_COMPONENT\": \"box C/D snoRNP complex, small nucleolar ribonucleoprotein complex\", \"SUID\": 73186, \"kegg\": \"sce:YOR310C\", \"shared_name\": \"YOR310C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"35S primary transcript processing, processing of 20S pre-rRNA, rRNA modification\", \"annotation_GO_MOLECULAR_FUNCTION\": \"molecular_function\", \"id\": \"73186\"}}, {\"position\": {\"x\": -839.6170529322261, \"y\": 1968.232895008302}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851548.0, \"degree_layout\": 2, \"label\": \"FBRL\", \"uniprot\": \"FBRL_YEAST\", \"name\": \"YDL014W\", \"sgd\": \"S000002172\", \"annotation_DB_Object_Name\": \"U3 snoRNP protein\", \"alias\": \"LOT3, NOP1, S000002172, U3 snoRNP protein\", \"annotation_GO_CELLULAR_COMPONENT\": \"nucleolus, small nucleolar ribonucleoprotein complex\", \"SUID\": 73185, \"kegg\": \"sce:YDL014W\", \"shared_name\": \"YDL014W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"35S primary transcript processing, RNA methylation, processing of 20S pre-rRNA, rRNA modification, ribosomal large subunit assembly and maintenance, snoRNA 3'-end processing\", \"annotation_GO_MOLECULAR_FUNCTION\": \"methyltransferase activity\", \"id\": \"73185\"}}, {\"position\": {\"x\": 28.048455095742753, \"y\": -2106.114646068156}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856236.0, \"degree_layout\": 2, \"label\": \"CG22\", \"uniprot\": \"CG22_YEAST\", \"name\": \"YPR119W\", \"sgd\": \"S000006323\", \"annotation_DB_Object_Name\": \"B-type cyclin\", \"alias\": \"B-type cyclin, CLB2, S000006323\", \"annotation_GO_CELLULAR_COMPONENT\": \"bud neck, cytoplasm, nucleus, spindle, spindle pole body\", \"SUID\": 73183, \"kegg\": \"sce:YPR119W\", \"shared_name\": \"YPR119W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"G2/M transition of mitotic cell cycle, regulation of cyclin-dependent protein kinase activity\", \"annotation_GO_MOLECULAR_FUNCTION\": \"cyclin-dependent protein kinase regulator activity\", \"id\": \"73183\"}}, {\"position\": {\"x\": -9.608416347697444, \"y\": -2102.300800516959}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 850808.0, \"degree_layout\": 2, \"label\": \"CLF1\", \"uniprot\": \"CLF1_YEAST\", \"name\": \"YLR117C\", \"sgd\": \"S000004107\", \"annotation_DB_Object_Name\": \"pre-mRNA splicing factor\", \"alias\": \"CLF1, NTC77, S000004107, SYF3, pre-mRNA splicing factor\", \"annotation_GO_CELLULAR_COMPONENT\": \"chromatin\", \"SUID\": 73181, \"kegg\": \"sce:YLR117C\", \"shared_name\": \"YLR117C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"DNA replication, cell cycle, cis assembly of pre-catalytic spliceosome, nuclear mRNA splicing, via spliceosome\", \"annotation_GO_MOLECULAR_FUNCTION\": \"protein binding\", \"id\": \"73181\"}}, {\"position\": {\"x\": 1660.3232530406406, \"y\": -602.4983128600857}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852871.0, \"degree_layout\": 3, \"label\": \"PDR1\", \"uniprot\": \"PDR1_YEAST\", \"name\": \"YGL013C\", \"sgd\": \"S000002981\", \"annotation_DB_Object_Name\": \"zinc finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type\", \"alias\": \"AMY1, ANT1, BOR2, CYH3, NRA2, PDR1, S000002981, SMR2, TIL1, TPE1, TPE3, zinc finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type\", \"annotation_GO_CELLULAR_COMPONENT\": \"nucleus\", \"SUID\": 73179, \"kegg\": \"sce:YGL013C\", \"shared_name\": \"YGL013C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"regulation of transcription from RNA polymerase II promoter, response to drug\", \"annotation_GO_MOLECULAR_FUNCTION\": \"DNA binding, transcriptional activator activity\", \"id\": \"73179\"}}, {\"position\": {\"x\": -158.91511105919412, \"y\": -2077.5896888008997}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 850447.0, \"degree_layout\": 2, \"label\": \"CSM1\", \"uniprot\": \"CSM1_YEAST\", \"name\": \"YCR086W\", \"sgd\": \"S000000682\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"CSM1, S000000682\", \"annotation_GO_CELLULAR_COMPONENT\": \"condensed nuclear chromosome kinetochore, nuclear envelope, nucleolus\", \"SUID\": 73177, \"kegg\": \"sce:YCR086W\", \"shared_name\": \"YCR086W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"DNA replication, homologous chromosome segregation, meiotic chromosome segregation, telomere maintenance\", \"annotation_GO_MOLECULAR_FUNCTION\": \"molecular_function\", \"id\": \"73177\"}}, {\"position\": {\"x\": 498.08701083824815, \"y\": 849.5232320176385}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852021.0, \"degree_layout\": 7, \"label\": \"RRP17\", \"uniprot\": \"RRP17_YEAST\", \"name\": \"YDR412W\", \"sgd\": \"S000002820\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"S000002820\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm\", \"SUID\": 73176, \"kegg\": \"sce:YDR412W\", \"shared_name\": \"YDR412W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"rRNA processing\", \"annotation_GO_MOLECULAR_FUNCTION\": \"molecular_function\", \"id\": \"73176\"}}, {\"position\": {\"x\": -266.4119721753385, \"y\": 2668.2328950083024}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855900.0, \"degree_layout\": 1, \"label\": \"YIG1\", \"uniprot\": \"YIG1_YEAST\", \"name\": \"YPL201C\", \"sgd\": \"S000006122\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"S000006122, YIG1\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytosol, nucleus\", \"SUID\": 73174, \"kegg\": \"sce:YPL201C\", \"shared_name\": \"YPL201C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"glycerol biosynthetic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"molecular_function\", \"id\": \"73174\"}}, {\"position\": {\"x\": -266.4119721753385, \"y\": 2468.2328950083024}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856791.0, \"degree_layout\": 1, \"label\": \"GPP2\", \"uniprot\": \"GPP2_YEAST\", \"name\": \"YER062C\", \"sgd\": \"S000000864\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"GPP2, HOR2, S000000864\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, nucleus\", \"SUID\": 73173, \"kegg\": \"sce:YER062C\", \"shared_name\": \"YER062C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"carbohydrate metabolic process, glycerol biosynthetic process, response to osmotic stress\", \"annotation_GO_MOLECULAR_FUNCTION\": \"glycerol-1-phosphatase activity\", \"id\": \"73173\"}}, {\"position\": {\"x\": -1138.6850056224505, \"y\": -1361.9608785721825}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854505.0, \"degree_layout\": 2, \"label\": \"SNC2\", \"uniprot\": \"SNC2_YEAST\", \"name\": \"YOR327C\", \"sgd\": \"S000005854\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"S000005854, SNC2\", \"annotation_GO_CELLULAR_COMPONENT\": \"Golgi trans face, endosome, transport vesicle\", \"SUID\": 73171, \"kegg\": \"sce:YOR327C\", \"shared_name\": \"YOR327C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"Golgi to plasma membrane transport, endocytosis, telomere maintenance, vesicle fusion\", \"annotation_GO_MOLECULAR_FUNCTION\": \"v-SNARE activity\", \"id\": \"73171\"}}, {\"position\": {\"x\": -1157.1947024506437, \"y\": -1328.9460863098573}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856886.0, \"degree_layout\": 2, \"label\": \"DDI1\", \"uniprot\": \"DDI1_YEAST\", \"name\": \"YER143W\", \"sgd\": \"S000000945\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"DDI1, S000000945, VSM1\", \"annotation_GO_CELLULAR_COMPONENT\": \"plasma membrane\", \"SUID\": 73169, \"kegg\": \"sce:YER143W\", \"shared_name\": \"YER143W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"ubiquitin-dependent protein catabolic process, vesicle-mediated transport\", \"annotation_GO_MOLECULAR_FUNCTION\": \"SNARE binding\", \"id\": \"73169\"}}, {\"position\": {\"x\": -1174.8655105118876, \"y\": -1295.4747862565443}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851203.0, \"degree_layout\": 2, \"label\": \"SNC1\", \"uniprot\": \"SNC1_YEAST\", \"name\": \"YAL030W\", \"sgd\": \"S000000028\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"S000000028, SNC1\", \"annotation_GO_CELLULAR_COMPONENT\": \"Golgi trans face, SNARE complex, endosome, transport vesicle\", \"SUID\": 73168, \"kegg\": \"sce:YAL030W\", \"shared_name\": \"YAL030W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"Golgi to plasma membrane transport, endocytosis, vesicle fusion\", \"annotation_GO_MOLECULAR_FUNCTION\": \"v-SNARE activity\", \"id\": \"73168\"}}, {\"position\": {\"x\": 766.9983094480232, \"y\": -1983.8142198297426}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854068.0, \"degree_layout\": 2, \"label\": \"ADH1\", \"uniprot\": \"ADH1_YEAST\", \"name\": \"YOL086C\", \"sgd\": \"S000005446\", \"annotation_DB_Object_Name\": \"alcohol dehydrogenase\", \"alias\": \"ADC1, ADH1, S000005446, alcohol dehydrogenase\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytosol\", \"SUID\": 73166, \"kegg\": \"sce:YOL086C\", \"shared_name\": \"YOL086C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"NADH oxidation, ethanol biosynthetic process during fermentation, fermentation\", \"annotation_GO_MOLECULAR_FUNCTION\": \"alcohol dehydrogenase activity\", \"id\": \"73166\"}}, {\"position\": {\"x\": 732.1919534404147, \"y\": -1998.68375130413}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851620.0, \"degree_layout\": 2, \"label\": \"TPIS\", \"uniprot\": \"TPIS_YEAST\", \"name\": \"YDR050C\", \"sgd\": \"S000002457\", \"annotation_DB_Object_Name\": \"triosephosphate isomerase\", \"alias\": \"S000002457, TPI1, triosephosphate isomerase\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm\", \"SUID\": 73164, \"kegg\": \"sce:YDR050C\", \"shared_name\": \"YDR050C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"glycolysis\", \"annotation_GO_MOLECULAR_FUNCTION\": \"triose-phosphate isomerase activity\", \"id\": \"73164\"}}, {\"position\": {\"x\": 553.1498274954175, \"y\": -2059.6178582850816}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 853993.0, \"degree_layout\": 2, \"label\": \"RL25\", \"uniprot\": \"RL25_YEAST\", \"name\": \"YOL127W\", \"sgd\": \"S000005487\", \"annotation_DB_Object_Name\": \"ribosomal protein L25 (rpl6L) (YL25)\", \"alias\": \"RPL25, S000005487, ribosomal protein L25 (rpl6L) (YL25)\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytosolic large ribosomal subunit (sensu the Eukaryota research community)\", \"SUID\": 73162, \"kegg\": \"sce:YOL127W\", \"shared_name\": \"YOL127W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"ribosomal large subunit assembly and maintenance\", \"annotation_GO_MOLECULAR_FUNCTION\": \"RNA binding, structural constituent of ribosome\", \"id\": \"73162\"}}, {\"position\": {\"x\": -1215.29989082504, \"y\": -13.981908469568854}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856805.0, \"degree_layout\": 1, \"label\": \"RS24B\", \"uniprot\": \"RS24B_YEAST\", \"name\": \"YIL069C\", \"sgd\": \"S000001331\", \"annotation_DB_Object_Name\": \"ribosomal protein S24B\", \"alias\": \"RPS24B, RPS24EB, S000001331, ribosomal protein S24B\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytosolic small ribosomal subunit (sensu the Eukaryota research community)\", \"SUID\": 73159, \"kegg\": \"sce:YIL069C\", \"shared_name\": \"YIL069C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"null\", \"annotation_GO_MOLECULAR_FUNCTION\": \"structural constituent of ribosome\", \"id\": \"73159\"}}, {\"position\": {\"x\": -1199.774342236767, \"y\": 20.536821603093184}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856805.0, \"degree_layout\": 1, \"label\": \"RS24B\", \"uniprot\": \"RS24B_YEAST\", \"name\": \"YER074W\", \"sgd\": \"S000001331\", \"annotation_DB_Object_Name\": \"ribosomal protein S24A\", \"alias\": \"RPS24A, RPS24EA, S000000876, ribosomal protein S24A\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytosolic small ribosomal subunit (sensu the Eukaryota research community), mitochondrion\", \"SUID\": 73157, \"kegg\": \"sce:YER074W\", \"shared_name\": \"YER074W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"null\", \"annotation_GO_MOLECULAR_FUNCTION\": \"structural constituent of ribosome\", \"id\": \"73157\"}}, {\"position\": {\"x\": 367.863272617608, \"y\": -2097.538048658848}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852390.0, \"degree_layout\": 2, \"label\": \"PPA5\", \"uniprot\": \"PPA5_YEAST\", \"name\": \"YBR093C\", \"sgd\": \"S000000297\", \"annotation_DB_Object_Name\": \"acid phosphatase\", \"alias\": \"PHO5, S000000297, acid phosphatase\", \"annotation_GO_CELLULAR_COMPONENT\": \"cell wall (sensu the Fungi research community), periplasmic space (sensu the Fungi research community)\", \"SUID\": 73155, \"kegg\": \"sce:YBR093C\", \"shared_name\": \"YBR093C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"cellular response to phosphate starvation, phosphate metabolic process, regulation of cell size\", \"annotation_GO_MOLECULAR_FUNCTION\": \"acid phosphatase activity, nucleoside-triphosphatase activity, nucleoside-triphosphate diphosphatase activity\", \"id\": \"73155\"}}, {\"position\": {\"x\": -1166.1356833741108, \"y\": 88.3444173087367}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851751.0, \"degree_layout\": 1, \"label\": \"HSP42\", \"uniprot\": \"HSP42_YEAST\", \"name\": \"YDR171W\", \"sgd\": \"S000002578\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"HSP42, S000002578\", \"annotation_GO_CELLULAR_COMPONENT\": \"chaperonin-containing T-complex, cytoplasm, cytoskeleton\", \"SUID\": 73153, \"kegg\": \"sce:YDR171W\", \"shared_name\": \"YDR171W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"cytoskeleton organization and biogenesis, response to stress\", \"annotation_GO_MOLECULAR_FUNCTION\": \"unfolded protein binding\", \"id\": \"73153\"}}, {\"position\": {\"x\": 1627.9668114725666, \"y\": -301.944759544752}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 850327.0, \"degree_layout\": 3, \"label\": \"HIS2\", \"uniprot\": \"HIS2_YEAST\", \"name\": \"YCL030C\", \"sgd\": \"S000000535\", \"annotation_DB_Object_Name\": \"histidinol dehydrogenase\", \"alias\": \"HIS4, S000000535, histidinol dehydrogenase\", \"annotation_GO_CELLULAR_COMPONENT\": \"intracellular\", \"SUID\": 73151, \"kegg\": \"sce:YCL030C\", \"shared_name\": \"YCL030C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"histidine biosynthetic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"histidinol dehydrogenase activity, phosphoribosyl-AMP cyclohydrolase activity, phosphoribosyl-ATP diphosphatase activity\", \"id\": \"73151\"}}, {\"position\": {\"x\": -1148.0439909890838, \"y\": 121.5901095325674}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855415.0, \"degree_layout\": 1, \"label\": \"RL18B\", \"uniprot\": \"RL18B_YEAST\", \"name\": \"YNL301C\", \"sgd\": \"S000005245\", \"annotation_DB_Object_Name\": \"ribosomal protein L18B (rp28B)\", \"alias\": \"RP28B, RPL18B, S000005245, ribosomal protein L18B (rp28B)\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytosolic large ribosomal subunit (sensu the Eukaryota research community)\", \"SUID\": 73149, \"kegg\": \"sce:YNL301C\", \"shared_name\": \"YNL301C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"null\", \"annotation_GO_MOLECULAR_FUNCTION\": \"structural constituent of ribosome\", \"id\": \"73149\"}}, {\"position\": {\"x\": -1129.119236137328, \"y\": 154.368746456594}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855415.0, \"degree_layout\": 1, \"label\": \"RL18B\", \"uniprot\": \"RL18B_YEAST\", \"name\": \"YOL120C\", \"sgd\": \"S000005245\", \"annotation_DB_Object_Name\": \"ribosomal protein L18A (rp28A)\", \"alias\": \"RP28A, RPL18A, S000005480, ribosomal protein L18A (rp28A)\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytosolic large ribosomal subunit (sensu the Eukaryota research community)\", \"SUID\": 73147, \"kegg\": \"sce:YOL120C\", \"shared_name\": \"YOL120C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"null\", \"annotation_GO_MOLECULAR_FUNCTION\": \"structural constituent of ribosome\", \"id\": \"73147\"}}, {\"position\": {\"x\": 1610.4591841720378, \"y\": -228.3043332032118}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 850733.0, \"degree_layout\": 3, \"label\": \"PDC1\", \"uniprot\": \"PDC1_YEAST\", \"name\": \"YLR044C\", \"sgd\": \"S000004034\", \"annotation_DB_Object_Name\": \"pyruvate decarboxylase\", \"alias\": \"PDC1, S000004034, pyruvate decarboxylase\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, nucleus\", \"SUID\": 73145, \"kegg\": \"sce:YLR044C\", \"shared_name\": \"YLR044C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"glucose catabolic process to ethanol, pyruvate metabolic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"pyruvate decarboxylase activity\", \"id\": \"73145\"}}, {\"position\": {\"x\": 405.27980609447593, \"y\": -2091.8294229599132}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 854673.0, \"degree_layout\": 2, \"label\": \"RL16A\", \"uniprot\": \"RL16A_YEAST\", \"name\": \"YIL133C\", \"sgd\": \"S000001395\", \"annotation_DB_Object_Name\": \"ribosomal protein L16A (L21A) (rp22) (YL15)\", \"alias\": \"RPL13, RPL16A, S000001395, ribosomal protein L16A (L21A) (rp22) (YL15)\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytosolic large ribosomal subunit (sensu the Eukaryota research community)\", \"SUID\": 73143, \"kegg\": \"sce:YIL133C\", \"shared_name\": \"YIL133C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"null\", \"annotation_GO_MOLECULAR_FUNCTION\": \"RNA binding, structural constituent of ribosome\", \"id\": \"73143\"}}, {\"position\": {\"x\": 697.021504995554, \"y\": -2012.6703499250782}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856579.0, \"degree_layout\": 2, \"label\": \"ENO2\", \"uniprot\": \"ENO2_YEAST\", \"name\": \"YHR174W\", \"sgd\": \"S000001217\", \"annotation_DB_Object_Name\": \"enolase\", \"alias\": \"ENO2, S000001217, enolase\", \"annotation_GO_CELLULAR_COMPONENT\": \"phosphopyruvate hydratase complex, soluble fraction\", \"SUID\": 73141, \"kegg\": \"sce:YHR174W\", \"shared_name\": \"YHR174W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"gluconeogenesis, glycolysis\", \"annotation_GO_MOLECULAR_FUNCTION\": \"phosphopyruvate hydratase activity\", \"id\": \"73141\"}}, {\"position\": {\"x\": 661.5093573002922, \"y\": -2025.7651103606909}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 853169.0, \"degree_layout\": 2, \"label\": \"ENO1\", \"uniprot\": \"ENO1_YEAST\", \"name\": \"YGR254W\", \"sgd\": \"S000003486\", \"annotation_DB_Object_Name\": \"enolase\", \"alias\": \"ENO1, HSP48, S000003486, enolase\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, phosphopyruvate hydratase complex\", \"SUID\": 73139, \"kegg\": \"sce:YGR254W\", \"shared_name\": \"YGR254W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"gluconeogenesis, glycolysis\", \"annotation_GO_MOLECULAR_FUNCTION\": \"phosphopyruvate hydratase activity\", \"id\": \"73139\"}}, {\"position\": {\"x\": 1651.7355485467253, \"y\": -451.40437036257543}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 850370.0, \"degree_layout\": 3, \"label\": \"PGK\", \"uniprot\": \"PGK_YEAST\", \"name\": \"YCR012W\", \"sgd\": \"S000000605\", \"annotation_DB_Object_Name\": \"3-phosphoglycerate kinase\", \"alias\": \"3-phosphoglycerate kinase, PGK1, S000000605\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, mitochondrion\", \"SUID\": 73137, \"kegg\": \"sce:YCR012W\", \"shared_name\": \"YCR012W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"gluconeogenesis, glycolysis\", \"annotation_GO_MOLECULAR_FUNCTION\": \"phosphoglycerate kinase activity\", \"id\": \"73137\"}}, {\"position\": {\"x\": 198.19959726814378, \"y\": 887.5615929662192}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855505.0, \"degree_layout\": 17, \"label\": \"RAP1\", \"uniprot\": \"RAP1_YEAST\", \"name\": \"YNL216W\", \"sgd\": \"S000005160\", \"annotation_DB_Object_Name\": \"repressor activator protein\", \"alias\": \"GRF1, RAP1, S000005160, TBA1, TUF1, repressor activator protein\", \"annotation_GO_CELLULAR_COMPONENT\": \"nuclear telomere cap complex, nuclear telomeric heterochromatin, nucleus\", \"SUID\": 73136, \"kegg\": \"sce:YNL216W\", \"shared_name\": \"YNL216W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"chromatin silencing, chromatin silencing at telomere, protection from non-homologous end joining at telomere, telomere maintenance via telomerase, transcription from RNA polymerase III promoter\", \"annotation_GO_MOLECULAR_FUNCTION\": \"DNA binding, transcription factor activity\", \"id\": \"73136\"}}, {\"position\": {\"x\": 1655.311764462959, \"y\": -489.08455168534323}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851193.0, \"degree_layout\": 3, \"label\": \"KPYK1\", \"uniprot\": \"KPYK1_YEAST\", \"name\": \"YAL038W\", \"sgd\": \"S000000036\", \"annotation_DB_Object_Name\": \"pyruvate kinase\", \"alias\": \"CDC19, PYK1, S000000036, pyruvate kinase\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytosol\", \"SUID\": 73134, \"kegg\": \"sce:YAL038W\", \"shared_name\": \"YAL038W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"glycolysis, pyruvate metabolic process\", \"annotation_GO_MOLECULAR_FUNCTION\": \"pyruvate kinase activity\", \"id\": \"73134\"}}, {\"position\": {\"x\": 589.5506103170607, \"y\": -2049.2463398442865}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855409.0, \"degree_layout\": 2, \"label\": \"MCK1\", \"uniprot\": \"MCK1_YEAST\", \"name\": \"YNL307C\", \"sgd\": \"S000005251\", \"annotation_DB_Object_Name\": \"43.1 kDa serine/threonine/tyrosine protein kinase\", \"alias\": \"43.1 kDa serine/threonine/tyrosine protein kinase, MCK1, S000005251, YPK1\", \"annotation_GO_CELLULAR_COMPONENT\": \"soluble fraction\", \"SUID\": 73133, \"kegg\": \"sce:YNL307C\", \"shared_name\": \"YNL307C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"double-strand break repair via nonhomologous end joining, meiosis, mitotic sister chromatid segregation, protein amino acid phosphorylation, response to stress, sporulation (sensu the Fungi research community)\", \"annotation_GO_MOLECULAR_FUNCTION\": \"glycogen synthase kinase 3 activity, protein threonine/tyrosine kinase activity\", \"id\": \"73133\"}}, {\"position\": {\"x\": 1366.0445745315494, \"y\": 280.40007326998176}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 851549.0, \"degree_layout\": 3, \"label\": \"SLX5\", \"uniprot\": \"SLX5_YEAST\", \"name\": \"YDL013W\", \"sgd\": \"S000002171\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"HEX3, S000002171, SLX5\", \"annotation_GO_CELLULAR_COMPONENT\": \"cellular_component\", \"SUID\": 73131, \"kegg\": \"sce:YDL013W\", \"shared_name\": \"YDL013W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"protein sumoylation, response to DNA damage stimulus, telomere maintenance\", \"annotation_GO_MOLECULAR_FUNCTION\": \"molecular_function\", \"id\": \"73131\"}}, {\"position\": {\"x\": -177.38081072983422, \"y\": 849.5232320176381}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856852.0, \"degree_layout\": 1, \"label\": \"SLX8\", \"uniprot\": \"SLX8_YEAST\", \"name\": \"YER116C\", \"sgd\": \"S000000918\", \"annotation_DB_Object_Name\": \"null\", \"alias\": \"S000000918, SLX8\", \"annotation_GO_CELLULAR_COMPONENT\": \"cellular_component\", \"SUID\": 73130, \"kegg\": \"sce:YER116C\", \"shared_name\": \"YER116C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"protein sumoylation, response to DNA damage stimulus, telomere maintenance\", \"annotation_GO_MOLECULAR_FUNCTION\": \"molecular_function\", \"id\": \"73130\"}}, {\"position\": {\"x\": 1319.4935007353477, \"y\": 340.0861431178003}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855789.0, \"degree_layout\": 3, \"label\": \"NOG2\", \"uniprot\": \"NOG2_YEAST\", \"name\": \"YNR053C\", \"sgd\": \"S000005336\", \"annotation_DB_Object_Name\": \"part of a pre-60S complex\", \"alias\": \"NOG2, S000005336, part of a pre-60S complex\", \"annotation_GO_CELLULAR_COMPONENT\": \"nucleolus, nucleoplasm, nucleus\", \"SUID\": 73128, \"kegg\": \"sce:YNR053C\", \"shared_name\": \"YNR053C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"ribosomal large subunit export from nucleus, ribosome assembly\", 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\"label\": \"EIF3G\", \"uniprot\": \"EIF3G_YEAST\", \"name\": \"YDR429C\", \"sgd\": \"S000002837\", \"annotation_DB_Object_Name\": \"translation initiation factor eIF3 subunit\", \"alias\": \"S000002837, TIF35, translation initiation factor eIF3 subunit\", \"annotation_GO_CELLULAR_COMPONENT\": \"eukaryotic translation initiation factor 3 complex\", \"SUID\": 73086, \"kegg\": \"sce:YDR429C\", \"shared_name\": \"YDR429C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"translational initiation\", \"annotation_GO_MOLECULAR_FUNCTION\": \"translation initiation factor activity\", \"id\": \"73086\"}}, {\"position\": {\"x\": -998.7873006269332, \"y\": 340.0861431178003}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 855177.0, \"degree_layout\": 1, \"label\": \"EIF3I\", \"uniprot\": \"EIF3I_YEAST\", \"name\": \"YMR146C\", \"sgd\": \"S000004754\", \"annotation_DB_Object_Name\": \"translation initiation factor eIF3 subunit\", \"alias\": \"S000004754, TIF34, translation initiation 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transport, rRNA processing\", \"annotation_GO_MOLECULAR_FUNCTION\": \"GTPase activity\", \"id\": \"73083\"}}, {\"position\": {\"x\": -939.6170529322261, \"y\": 2168.2328950083024}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 856195.0, \"degree_layout\": 2, \"label\": \"EF1A\", \"uniprot\": \"EF1A_YEAST\", \"name\": \"YBR118W\", \"sgd\": \"S000006284\", \"annotation_DB_Object_Name\": \"eEF1A, translational elongation factor EF-1 alpha\", \"alias\": \" translational elongation factor EF-1 alpha, EF-1 alpha, S000000322, TEF2, eEF1A\", \"annotation_GO_CELLULAR_COMPONENT\": \"eukaryotic translation elongation factor 1 complex, ribosome\", \"SUID\": 73081, \"kegg\": \"sce:YBR118W\", \"shared_name\": \"YBR118W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"translational elongation\", \"annotation_GO_MOLECULAR_FUNCTION\": \"translation elongation factor activity\", \"id\": \"73081\"}}, {\"position\": {\"x\": -1339.617052932226, \"y\": 2168.232895008302}, \"selected\": false, 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translational initiation\", \"annotation_GO_MOLECULAR_FUNCTION\": \"RNA helicase activity\", \"id\": \"73076\"}}, {\"position\": {\"x\": 340.80555358583536, \"y\": 1868.232895008302}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852782.0, \"degree_layout\": 3, \"label\": \"RCC1\", \"uniprot\": \"RCC1_YEAST\", \"name\": \"YGL097W\", \"sgd\": \"S000003065\", \"annotation_DB_Object_Name\": \"pheromone response pathway suppressor\", \"alias\": \"MTR1, PRP20, S000003065, SRM1, pheromone response pathway suppressor\", \"annotation_GO_CELLULAR_COMPONENT\": \"nuclear chromatin, nucleus\", \"SUID\": 73074, \"kegg\": \"sce:YGL097W\", \"shared_name\": \"YGL097W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"rRNA export from nucleus, ribosome export from nucleus\", \"annotation_GO_MOLECULAR_FUNCTION\": \"signal transducer activity\", \"id\": \"73074\"}}, {\"position\": {\"x\": 140.80555358583538, \"y\": 1668.232895008302}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 853133.0, \"degree_layout\": 1, \"label\": \"XPO1\", \"uniprot\": \"XPO1_YEAST\", \"name\": \"YGR218W\", \"sgd\": \"S000003450\", \"annotation_DB_Object_Name\": \"chromosome region maintenance protein\", \"alias\": \"CRM1, KAP124, S000003450, XPO1, chromosome region maintenance protein\", \"annotation_GO_CELLULAR_COMPONENT\": \"nucleus\", \"SUID\": 73073, \"kegg\": \"sce:YGR218W\", \"shared_name\": \"YGR218W\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"mRNA export from nucleus, protein export from nucleus, ribosomal large subunit export from nucleus\", \"annotation_GO_MOLECULAR_FUNCTION\": \"protein carrier activity\", \"id\": \"73073\"}}, {\"position\": {\"x\": 1653.6425092670459, \"y\": -753.6885764042288}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 852755.0, \"degree_layout\": 3, \"label\": \"NAB2\", \"uniprot\": \"NAB2_YEAST\", \"name\": \"YGL122C\", \"sgd\": \"S000003090\", \"annotation_DB_Object_Name\": \"polyadenylated RNA binding protein\", \"alias\": \"NAB2, S000003090, polyadenylated RNA binding protein\", \"annotation_GO_CELLULAR_COMPONENT\": \"cytoplasm, nucleus\", \"SUID\": 73071, \"kegg\": \"sce:YGL122C\", \"shared_name\": \"YGL122C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"mRNA polyadenylation, poly(A)+ mRNA export from nucleus\", \"annotation_GO_MOLECULAR_FUNCTION\": \"poly(A) binding\", \"id\": \"73071\"}}, {\"position\": {\"x\": -693.5402527578924, \"y\": 621.2731389700327}, \"selected\": false, \"data\": {\"selected\": false, \"entrez\": 853896.0, \"degree_layout\": 1, \"label\": \"EI2BA\", \"uniprot\": \"EI2BA_YEAST\", \"name\": \"YKR026C\", \"sgd\": \"S000001734\", \"annotation_DB_Object_Name\": \"eIF2B 34 kDa alpha subunit\", \"alias\": \"AAS2, GCN3, S000001734, eIF2B 34 kDa alpha subunit\", \"annotation_GO_CELLULAR_COMPONENT\": \"eukaryotic translation initiation factor 2B complex, guanyl-nucleotide exchange factor complex\", \"SUID\": 73070, \"kegg\": \"sce:YKR026C\", \"shared_name\": \"YKR026C\", \"annotation_GO_BIOLOGICAL_PROCESS\": \"regulation of translational initiation\", \"annotation_GO_MOLECULAR_FUNCTION\": \"enzyme regulator activity, guanyl-nucleotide exchange factor activity, translation initiation factor activity\", \"id\": \"73070\"}}],\n",
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{\"selected\": false, \"data\": {\"target\": \"73221\", \"selected\": false, \"source\": \"73701\", \"shared_interaction\": \"pp\", \"name\": \"YMR117C (pp) YCL032W\", \"shared_name\": \"YMR117C (pp) YCL032W\", \"interaction\": \"pp\", \"SUID\": 73702, \"id\": \"73702\"}}, {\"selected\": false, \"data\": {\"target\": \"73553\", \"selected\": false, \"source\": \"73699\", \"shared_interaction\": \"pp\", \"name\": \"YML114C (pp) YDR167W\", \"shared_name\": \"YML114C (pp) YDR167W\", \"interaction\": \"pp\", \"SUID\": 73700, \"id\": \"73700\"}}, {\"selected\": false, \"data\": {\"target\": \"73243\", \"selected\": false, \"source\": \"73697\", \"shared_interaction\": \"pp\", \"name\": \"YNL036W (pp) YIR009W\", \"shared_name\": \"YNL036W (pp) YIR009W\", \"interaction\": \"pp\", \"SUID\": 73698, \"id\": \"73698\"}}, {\"selected\": false, \"data\": {\"target\": \"73224\", \"selected\": false, \"source\": \"73695\", \"shared_interaction\": \"pp\", \"name\": \"YOR212W (pp) YLR362W\", 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73741, \"id\": \"73741\"}}, {\"selected\": false, \"data\": {\"target\": \"73162\", \"selected\": false, \"source\": \"73668\", \"shared_interaction\": \"pp\", \"name\": \"YDR395W (pp) YOL127W\", \"shared_name\": \"YDR395W (pp) YOL127W\", \"interaction\": \"pp\", \"SUID\": 73740, \"id\": \"73740\"}}, {\"selected\": false, \"data\": {\"target\": \"73738\", \"selected\": false, \"source\": \"73668\", \"shared_interaction\": \"pp\", \"name\": \"YDR395W (pp) YIL052C\", \"shared_name\": \"YDR395W (pp) YIL052C\", \"interaction\": \"pp\", \"SUID\": 73739, \"id\": \"73739\"}}, {\"selected\": false, \"data\": {\"target\": \"73736\", \"selected\": false, \"source\": \"73668\", \"shared_interaction\": \"pp\", \"name\": \"YDR395W (pp) YER056CA\", \"shared_name\": \"YDR395W (pp) YER056CA\", \"interaction\": \"pp\", \"SUID\": 73737, \"id\": \"73737\"}}, {\"selected\": false, \"data\": {\"target\": \"73734\", \"selected\": false, \"source\": \"73668\", \"shared_interaction\": \"pp\", \"name\": 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{\"selected\": false, \"data\": {\"target\": \"73612\", \"selected\": false, \"source\": \"73629\", \"shared_interaction\": \"pd\", \"name\": \"YDR299W (pd) YJL194W\", \"shared_name\": \"YDR299W (pd) YJL194W\", \"interaction\": \"pd\", \"SUID\": 73630, \"id\": \"73630\"}}, {\"selected\": false, \"data\": {\"target\": \"73224\", \"selected\": false, \"source\": \"73627\", \"shared_interaction\": \"pp\", \"name\": \"YHR005C (pp) YLR362W\", \"shared_name\": \"YHR005C (pp) YLR362W\", \"interaction\": \"pp\", \"SUID\": 73691, \"id\": \"73691\"}}, {\"selected\": false, \"data\": {\"target\": \"73627\", \"selected\": false, \"source\": \"73626\", \"shared_interaction\": \"pp\", \"name\": \"YLR452C (pp) YHR005C\", \"shared_name\": \"YLR452C (pp) YHR005C\", \"interaction\": \"pp\", \"SUID\": 73628, \"id\": \"73628\"}}, {\"selected\": false, \"data\": {\"target\": \"73071\", \"selected\": false, \"source\": \"73624\", \"shared_interaction\": \"pp\", \"name\": \"YMR255W (pp) YGL122C\", 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       "                window.cy = this;\n",
       "                cy.fit();\n",
       "                cy.style().fromJson([{\"selector\": \"node\", \"css\": {\"text-opacity\": 1.0, \"text-valign\": \"center\", \"color\": \"rgb(85,85,85)\", \"border-opacity\": 1.0, \"width\": 55.0, \"border-color\": \"rgb(0,0,0)\", \"font-family\": \"SansSerif\", \"font-size\": 12, \"height\": 55.0, \"content\": \"data(label)\", \"shape\": \"ellipse\", \"background-color\": \"rgb(106,172,184)\", \"border-width\": 0.0, \"font-weight\": \"normal\", \"text-halign\": \"center\", \"background-opacity\": 1.0}}, {\"selector\": \"node[degree_layout > 18]\", \"css\": {\"width\": 100.0}}, {\"selector\": \"node[degree_layout = 18]\", \"css\": {\"width\": 100.0}}, {\"selector\": \"node[degree_layout > 1][degree_layout < 18]\", \"css\": {\"width\": \"mapData(degree_layout,1,18,10.0,100.0)\"}}, {\"selector\": \"node[degree_layout = 1]\", \"css\": {\"width\": 10.0}}, {\"selector\": \"node[degree_layout < 1]\", \"css\": {\"width\": 10.0}}, {\"selector\": \"node[degree_layout > 18]\", \"css\": {\"background-color\": \"rgb(106,172,184)\"}}, {\"selector\": \"node[degree_layout = 18]\", \"css\": {\"background-color\": \"rgb(106,172,184)\"}}, {\"selector\": \"node[degree_layout > 1][degree_layout < 18]\", \"css\": {\"background-color\": \"mapData(degree_layout,1,18,rgb(255,255,255),rgb(106,172,184))\"}}, {\"selector\": \"node[degree_layout = 1]\", \"css\": {\"background-color\": \"rgb(255,255,255)\"}}, {\"selector\": \"node[degree_layout < 1]\", \"css\": {\"background-color\": \"rgb(255,255,255)\"}}, {\"selector\": \"node[degree_layout > 18]\", \"css\": {\"height\": 100.0}}, {\"selector\": \"node[degree_layout = 18]\", \"css\": {\"height\": 100.0}}, {\"selector\": \"node[degree_layout > 1][degree_layout < 18]\", \"css\": {\"height\": \"mapData(degree_layout,1,18,10.0,100.0)\"}}, {\"selector\": \"node[degree_layout = 1]\", \"css\": {\"height\": 10.0}}, {\"selector\": \"node[degree_layout < 1]\", \"css\": {\"height\": 10.0}}, {\"selector\": \"node[degree_layout > 18]\", \"css\": {\"font-size\": 100}}, {\"selector\": \"node[degree_layout = 18]\", \"css\": {\"font-size\": 100}}, {\"selector\": \"node[degree_layout > 1][degree_layout < 18]\", \"css\": {\"font-size\": \"mapData(degree_layout,1,18,10,100)\"}}, {\"selector\": \"node[degree_layout = 1]\", \"css\": {\"font-size\": 10}}, {\"selector\": \"node[degree_layout < 1]\", \"css\": {\"font-size\": 10}}, {\"selector\": \"node:selected\", \"css\": {\"background-color\": \"rgb(255,255,0)\"}}, {\"selector\": \"edge\", \"css\": {\"source-arrow-color\": \"rgb(0,0,0)\", \"text-opacity\": 1.0, \"source-arrow-shape\": \"none\", \"opacity\": 0.39215686274509803, \"width\": 2.0, \"font-weight\": \"normal\", \"font-family\": \"SansSerif\", \"font-size\": 10, \"line-color\": \"rgb(51,51,51)\", \"content\": \"\", \"color\": \"rgb(0,0,0)\", \"line-style\": \"solid\", \"target-arrow-color\": \"rgb(0,0,0)\", \"target-arrow-shape\": \"none\"}}, {\"selector\": \"edge:selected\", \"css\": {\"line-color\": \"rgb(255,0,0)\"}}]).update();\n",
       "            }\n",
       "        });\n",
       "      }\n",
       "\n",
       "      var before_render = function(){\n",
       "        if(window['cytoscape'] === undefined){\n",
       "          console.log(\"Waiting for Cyjs...\");\n",
       "          window.addEventListener(\"load_cytoscape\", before_render);\n",
       "        } else {\n",
       "          console.log(\"Ready to render graph!\");\n",
       "          render();\n",
       "        }\n",
       "      }\n",
       "\n",
       "      before_render();\n",
       "\n",
       "    })();\n",
       "    </script>\n",
       "</head>\n",
       "\n",
       "<body>\n",
       "  <div id=\"cy85c0acc1-64ba-456e-9895-2352066c6aed\"></div>\n",
       "  <!-- When only #uuid div is placed on this page,\n",
       "  the height of output-box on ipynb will be 0px.\n",
       "  One line below will prevent that. -->\n",
       "  <div id=\"dummy\" style=\"width:1098px;height:700px\">\n",
       "</body>\n",
       "\n",
       "</html>"
      ],
      "text/plain": [
       "<IPython.core.display.HTML object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "color_gradient = StyleUtil.create_2_color_gradient(min=degrees.min(), max=degrees.max(), colors=('white', '#6AACB8'))\n",
    "degree_to_size = StyleUtil.create_slope(min=degrees.min(), max=degrees.max(), values=(10, 100))\n",
    "my_yeast_style.create_continuous_mapping(column='degree.layout', vp='NODE_FILL_COLOR', col_type='Integer', points=color_gradient)\n",
    "my_yeast_style.create_continuous_mapping(column='degree.layout', vp='NODE_SIZE', col_type='Integer', points=degree_to_size)\n",
    "my_yeast_style.create_continuous_mapping(column='degree.layout', vp='NODE_WIDTH', col_type='Integer', points=degree_to_size)\n",
    "my_yeast_style.create_continuous_mapping(column='degree.layout', vp='NODE_HEIGHT', col_type='Integer', points=degree_to_size)\n",
    "\n",
    "my_yeast_style.create_continuous_mapping(column='degree.layout', vp='NODE_LABEL_FONT_SIZE', col_type='Integer', points=degree_to_size)\n",
    "\n",
    "cy.style.apply(my_yeast_style, yeast_net)\n",
    "\n",
    "# Step 7: (Optional) Embed as interactive Cytoscape.js widget\n",
    "yeast_net_view = yeast_net.get_first_view()\n",
    "style_for_widget = cy.style.get(my_yeast_style.get_name(), data_format='cytoscapejs')\n",
    "renderer.render(yeast_net_view, style=style_for_widget['style'], background='radial-gradient(#FFFFFF 15%, #DDDDDD 105%)')"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Long Description\n",
    "From version 0.4.0, ___py2cytoscape___ has wrapper modules for [cyREST](http://apps.cytoscape.org/apps/cyrest) RESTful API.  This means you can access Cytoscape features in more _Pythonic_ way instead of calling raw REST API via HTTP.  \n",
    "\n",
    "\n",
    "## Features\n",
    "\n",
    "### Pandas for basic data exchange\n",
    "Since [pandas](http://pandas.pydata.org/) is a standard library for data mangling/analysis in Python, this new version uses its [DataFrame](http://pandas.pydata.org/pandas-docs/stable/generated/pandas.DataFrame.html#pandas.DataFrame) as its basic data object.\n",
    "\n",
    "### Embedded Cytoscaep.js Widget\n",
    "You can use Cytoscape.js widget to embed your final result as a part of your notebook.\n",
    "\n",
    "### Simpler Code to access Cytoscape\n",
    "cyREST provides language-agnostic RESTful API, but you need to use a lot of template code to access raw API.  Here is an example.  Both of the following do the same task, which is creating an empty network in Cytoscape.  You will notice it is significantly simpler if you use _py2cytoscape_ wrapper API.\n",
    "\n",
    "#### Raw cyREST"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "# HTTP Client for Python\n",
    "import requests\n",
    "\n",
    "# Standard JSON library\n",
    "import json\n",
    "\n",
    "# Basic Setup\n",
    "PORT_NUMBER = 1234\n",
    "BASE = 'http://localhost:' + str(PORT_NUMBER) + '/v1/'\n",
    "\n",
    "# Header for posting data to the server as JSON\n",
    "HEADERS = {'Content-Type': 'application/json'}\n",
    "\n",
    "# Define dictionary of empty network\n",
    "empty_network = {\n",
    "        'data': {\n",
    "            'name': 'I\\'m empty!'\n",
    "        },\n",
    "        'elements': {\n",
    "            'nodes':[],\n",
    "            'edges':[]\n",
    "        }\n",
    "}\n",
    "\n",
    "res = requests.post(BASE + 'networks?collection=My%20Collection', data=json.dumps(empty_network), headers=HEADERS)\n",
    "new_network_id = res.json()['networkSUID']\n",
    "print('New network created with raw REST API.  Its SUID is ' + str(new_network_id))"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "#### With py2cytoscape"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "network = cy.network.create(name='My Network', collection='My network collection')\n",
    "print('New network created with py2cytoscape.  Its SUID is ' + str(network.get_id()))"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Status\n",
    "\n",
    "As of 6/4/2015, this is still in alpha status and feature requests are always welcome.  If youi have questions or feature requests,  please send them to our Google Groups:\n",
    "\n",
    "* https://groups.google.com/forum/#!forum/cytoscape-discuss"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Quick Tour of py2cytoscape Features\n",
    "\n",
    "----\n",
    "\n",
    "## Create a client object to connect to Cytoscape"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "# Create an instance of cyREST client.  Default IP is 'localhost', and port number is 1234.\n",
    "# cy = CyRestClient() - This default constructor creates connection to http://localhost:1234/v1\n",
    "cy = CyRestClient(ip='127.0.0.1', port=1234)\n",
    "\n",
    "# Cleanup: Delete all existing networks and tables in current Cytoscape session\n",
    "cy.session.delete()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Creating empty networks"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "# Empty network\n",
    "empty1 = cy.network.create()\n",
    "\n",
    "# With name\n",
    "empty2 = cy.network.create(name='Created in Jupyter Notebook')\n",
    "\n",
    "# With name and collection name\n",
    "empty3 = cy.network.create(name='Also created in Jupyter', collection='New network collection')"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Load networks from files, URLs or web services"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "# Load a single local file\n",
    "net_from_local2 = cy.network.create_from('../tests/data/galFiltered.json')\n",
    "net_from_local1 = cy.network.create_from('sample_yeast_network.xgmml', collection='My Collection')\n",
    "net_from_local2 = cy.network.create_from('../tests/data/galFiltered.gml', collection='My Collection')\n",
    "\n",
    "# Load from multiple locations\n",
    "network_locations = [\n",
    "    'sample_yeast_network.xgmml', # Local file\n",
    "    'http://chianti.ucsd.edu/cytoscape-data/galFiltered.sif', # Static file on a web server\n",
    "    'http://www.ebi.ac.uk/Tools/webservices/psicquic/intact/webservices/current/search/query/brca1?format=xml25' # or a web service\n",
    "]\n",
    "\n",
    "# This requrns Series\n",
    "networks = cy.network.create_from(network_locations)\n",
    "pd.DataFrame(networks, columns=['CyNetwork'])"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Create networks from various types of data\n",
    "Currently, py2cytoscape accepts the following data as input:\n",
    "\n",
    "* Cytoscape.js\n",
    "* NetworkX\n",
    "* Pandas DataFrame\n",
    "\n",
    "\n",
    "* igraph (TBD)\n",
    "* Numpy adjacency matrix (binary or weighted) (TBD)\n",
    "* GraphX (TBD)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "# Cytoscape.js JSON\n",
    "n1 = cy.network.create(data=cyjs.get_empty_network(), name='Created from Cytoscape.js JSON')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "# Pandas DataFrame\n",
    "\n",
    "# Example 1: From a simple text table\n",
    "df_from_sif = pd.read_csv('../tests/data/galFiltered.sif', names=['source', 'interaction', 'target'], sep=' ')\n",
    "df_from_sif.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "# By default, it uses 'source' for source node column, 'target' for target node column, and 'interaction' for interaction\n",
    "yeast1 = cy.network.create_from_dataframe(df_from_sif, name='Yeast network created from pandas DataFrame')\n",
    "\n",
    "# Example 2: from more complicated table\n",
    "df_from_mitab = pd.read_csv('intact_pubid_22094256.txt', sep='\\t')\n",
    "df_from_mitab.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "source = df_from_mitab.columns[0]\n",
    "target = df_from_mitab.columns[1]\n",
    "interaction = 'Interaction identifier(s)'\n",
    "title='A Systematic Screen for CDK4/6 Substrates Links FOXM1 Phosphorylation to Senescence Suppression in Cancer Cells.'\n",
    "\n",
    "human1 = cy.network.create_from_dataframe(df_from_mitab, source_col=source, target_col=target, interaction_col=interaction, name=title)\n",
    "\n",
    "\n",
    "# Import edge attributes and node attributes at the same time (TBD)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "# NetworkX\n",
    "nx_graph  = nx.scale_free_graph(100)\n",
    "nx.set_node_attributes(nx_graph, 'Degree', nx.degree(nx_graph))\n",
    "nx.set_node_attributes(nx_graph, 'Betweenness_Centrality', nx.betweenness_centrality(nx_graph))\n",
    "scale_free100 = cy.network.create_from_networkx(nx_graph, collection='Generated by NetworkX')\n",
    "\n",
    "# TODO: igraph\n",
    "# TODO: Numpy adj. martix\n",
    "# TODO: GraphX"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Get Network from Cytoscape\n",
    "\n",
    "You can get network data in the following forms:\n",
    "\n",
    "* Cytoscape.js\n",
    "* NetworkX\n",
    "* DataFrame"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "# As Cytoscape.js (dict)\n",
    "yeast1_json = yeast1.to_json()\n",
    "\n",
    "# print(json.dumps(yeast1_json, indent=4))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "# As NetworkX graph object\n",
    "sf100 = scale_free100.to_networkx()\n",
    "\n",
    "num_nodes = sf100.number_of_nodes()\n",
    "num_edges = sf100.number_of_edges()\n",
    "\n",
    "print('Number of Nodes: ' + str(num_nodes))\n",
    "print('Number of Edges: ' + str(num_edges))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "# As a simple, SIF-like DataFrame\n",
    "yeast1_df = yeast1.to_dataframe()\n",
    "yeast1_df.head()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Working with CyNetwork API\n",
    "___CyNetwork___ class is a simple wrapper for network-related cyREST raw REST API.  __It does not hold the actual network data.  It's a reference to a network in current Cytoscape session__.  With CyNetwork API, you can access Cytoscape data objects in more Pythonista-friendly way."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "network_suid = yeast1.get_id()\n",
    "print('This object references to Cytoscape network with SUID ' + str(network_suid) + '\\n')\n",
    "print('And its name is: ' + str(yeast1.get_network_value(column='name')) + '\\n')\n",
    "\n",
    "nodes = yeast1.get_nodes()\n",
    "edges = yeast1.get_edges()\n",
    "\n",
    "print('* This network has ' + str(len(nodes)) + ' nodes and ' + str(len(edges)) + ' edges\\n') \n",
    "\n",
    "# Get a row in the node table as pandas Series object\n",
    "node0 = nodes[0]\n",
    "row = yeast1.get_node_value(id=node0)\n",
    "print(row)\n",
    "\n",
    "# Or, pick one cell in the table\n",
    "cell = yeast1.get_node_value(id=node0, column='name')\n",
    "print('\\nThis node has name: ' + str(cell))"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Get references from existing networks\n",
    "And of course, you can grab references to existing Cytoscape networks:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "# Create a new CyNetwork object from existing network\n",
    "network_ref1 = cy.network.create(suid=yeast1.get_id())\n",
    "\n",
    "# And they are considered as same objects.\n",
    "print(network_ref1 == yeast1)\n",
    "print(network_ref1.get_network_value(column='name'))"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Tables as DataFrame\n",
    "Cytoscape has two main data types: ___Network___ and ___Table___.  Network is the graph topology, and Tables are properties for those graphs.  For simplicity, this library has access to three basic table objects:\n",
    "\n",
    "* Node Table\n",
    "* Edge Table\n",
    "* Network Table\n",
    "\n",
    "For 99% of your use cases, you can use these three to store properties.  Since [pandas](http://pandas.pydata.org/) is extremely useful to handle table data, default data type for tables is __DataFrame__.  However, you can also use other data types including:\n",
    "\n",
    "* Cytoscape.js style JSON\n",
    "* CSV\n",
    "* TSV\n",
    "* CX (TBD)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "# Get table  from Cytoscape\n",
    "node_table = scale_free100.get_node_table()\n",
    "edge_table = scale_free100.get_edge_table()\n",
    "network_table = scale_free100.get_network_table()\n",
    "node_table.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "network_table.transpose().head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "names = scale_free100.get_node_column('Degree')\n",
    "print(names.head())\n",
    "\n",
    "# Node Column information.  \"name\" is the unique Index\n",
    "scale_free100.get_node_columns()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Edit Network Topology\n",
    "\n",
    "### Adding and deleteing nodes/edges"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "# Add new nodes: Simply send the list of node names.  NAMES SHOULD BE UNIQUE!\n",
    "new_node_names = ['a', 'b', 'c']\n",
    "# Return value contains dictionary from name to SUID.\n",
    "new_nodes = scale_free100.add_nodes(new_node_names)\n",
    "\n",
    "# Add new edges\n",
    "# Send a list of tuples:  (source node SUID, target node SUID, interaction type\n",
    "new_edges = []\n",
    "new_edges.append((new_nodes['a'], new_nodes['b'], 'type1'))\n",
    "new_edges.append((new_nodes['a'], new_nodes['c'], 'type2'))\n",
    "new_edges.append((new_nodes['b'], new_nodes['c'], 'type3'))\n",
    "\n",
    "new_edge_ids = scale_free100.add_edges(new_edges)\n",
    "new_edge_ids"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "# Delete node\n",
    "scale_free100.delete_node(new_nodes['a'])\n",
    "\n",
    "# Delete edge\n",
    "scale_free100.delete_edge(new_edge_ids.index[0])"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Update Table\n",
    "Let's do something a bit more realistic.  You can update any Tables by using DataFrame objects.\n",
    "\n",
    "### 1. ID conversion with external service\n",
    "Let's use [ID Conversion web service by Uniprot](http://www.uniprot.org/help/programmatic_access) to add more information to existing yeast network in current session."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "# Small utility function to convert ID sets\n",
    "import requests\n",
    "\n",
    "def uniprot_id_mapping_service(query=None, from_id=None, to_id=None):\n",
    "    # Uniprot ID Mapping service\n",
    "    url = 'http://www.uniprot.org/mapping/'\n",
    "    payload = {\n",
    "        'from': from_id,\n",
    "        'to': to_id,\n",
    "        'format':'tab',\n",
    "        'query': query\n",
    "    }\n",
    "    \n",
    "    res = requests.get(url, params=payload)\n",
    "    \n",
    "    df = pd.read_csv(res.url, sep='\\t')\n",
    "    res.close()\n",
    "    return df"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "# Get node table from Cytoscape\n",
    "yeast_node_table = yeast1.get_node_table()\n",
    "\n",
    "# From KEGG ID to UniprotKB ID\n",
    "query1 = ' '.join(yeast_node_table['name'].map(lambda gene_id: 'sce:' + gene_id).values)\n",
    "id_map_kegg2uniprot = uniprot_id_mapping_service(query1, from_id='KEGG_ID', to_id='ID')\n",
    "id_map_kegg2uniprot.columns = ['kegg', 'uniprot']\n",
    "\n",
    "# From UniprotKB to SGD\n",
    "query2 = ' '.join(id_map_kegg2uniprot['uniprot'].values)\n",
    "id_map_uniprot2sgd = uniprot_id_mapping_service(query2, from_id='ID', to_id='SGD_ID')\n",
    "id_map_uniprot2sgd.columns = ['uniprot', 'sgd']\n",
    "\n",
    "# From UniprotKB to Entrez Gene ID\n",
    "query3 = ' '.join(id_map_kegg2uniprot['uniprot'].values)\n",
    "id_map_uniprot2ncbi = uniprot_id_mapping_service(query3, from_id='ID', to_id='P_ENTREZGENEID')\n",
    "id_map_uniprot2ncbi.columns = ['uniprot', 'entrez']\n",
    "\n",
    "# Merge them\n",
    "merged = pd.merge(id_map_kegg2uniprot, id_map_uniprot2sgd, on='uniprot')\n",
    "merged = pd.merge(merged, id_map_uniprot2ncbi, on='uniprot')\n",
    "\n",
    "# Add key column by removing prefix\n",
    "merged['name'] = merged['kegg'].map(lambda kegg_id : kegg_id[4:])\n",
    "merged.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "update_url = BASE + 'networks/' + str(yeast1.get_id()) + '/tables/defaultnode'\n",
    "print(update_url)\n",
    "\n",
    "ut = {\n",
    "    'key': 'name',\n",
    "    'dataKey': 'name',\n",
    "    'data': [\n",
    "        {\n",
    "            'name': 'YBR112C',\n",
    "            'foo': 'aaaaaaaa'\n",
    "        }\n",
    "    ]\n",
    "}\n",
    "\n",
    "requests.put(update_url, json=ut, headers=HEADERS)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "# Now update existing node table with the data frame above.\n",
    "yeast1.update_node_table(merged, network_key_col='name', data_key_col='name')\n",
    "\n",
    "# Check the table is actually updated\n",
    "yeast1.get_node_table().head()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Create / Delete Table Data\n",
    "Currently, ___you cannot delete the table or rows___ due to the Cytoscape data model design.  However, it is easy to create / delete columns:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "# Delete columns\n",
    "yeast1.delete_node_table_column('kegg')\n",
    "\n",
    "# Create columns\n",
    "yeast1.create_node_column(name='New Empty Double Column', data_type='Double', is_immutable=False, is_list=False)\n",
    "\n",
    "# Default is String, mutable column.\n",
    "yeast1.create_node_column(name='Empty String Col')\n",
    "\n",
    "yeast1.get_node_table().head()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Visual Styles\n",
    "You can also use wrapper API to access Visual Styles.\n",
    "\n",
    "Current limitations are:\n",
    "\n",
    "* You need to use unique name for the Styles\n",
    "* Need to know how to write serialized form of objects"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "# Get all existing Visual Styles\n",
    "import json\n",
    "styles = cy.style.get_all()\n",
    "print(json.dumps(styles, indent=4))\n",
    "\n",
    "# Create a new style\n",
    "style1 = cy.style.create('sample_style1')\n",
    "\n",
    "# Get a reference to the existing style\n",
    "default_style = cy.style.create('default')\n",
    "\n",
    "print(style1.get_name())\n",
    "print(default_style.get_name())\n",
    "\n",
    "# Get all available Visual Properties\n",
    "print(len(cy.style.vps.get_all()))\n",
    "\n",
    "# Get  Visual Properties for each data type\n",
    "node_vps = cy.style.vps.get_node_visual_props()\n",
    "edge_vps = cy.style.vps.get_edge_visual_props()\n",
    "network_vps = cy.style.vps.get_network_visual_props()\n",
    "\n",
    "print(pd.Series(edge_vps).head())"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Set default values\n",
    "To set default values for Visual Properties, simply pass key-value pairs as dictionary."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "# Prepare key-value pair for Style defaults\n",
    "\n",
    "new_defaults = {\n",
    "    # Node defaults\n",
    "    'NODE_FILL_COLOR': '#eeeeff',\n",
    "    'NODE_SIZE': 20,\n",
    "    'NODE_BORDER_WIDTH': 0,\n",
    "    'NODE_TRANSPARENCY': 120,\n",
    "    'NODE_LABEL_COLOR': 'white',\n",
    "    \n",
    "    # Edge defaults\n",
    "    'EDGE_WIDTH': 3,\n",
    "    'EDGE_STROKE_UNSELECTED_PAINT': '#aaaaaa',\n",
    "    'EDGE_LINE_TYPE': 'LONG_DASH',\n",
    "    'EDGE_TRANSPARENCY': 120,\n",
    "    \n",
    "    # Network defaults\n",
    "    'NETWORK_BACKGROUND_PAINT': 'black'\n",
    "}\n",
    "\n",
    "# Update\n",
    "style1.update_defaults(new_defaults)\n",
    "\n",
    "# Apply the new style\n",
    "cy.style.apply(style1, yeast1)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Visual Mappings"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "# Passthrough mapping\n",
    "style1.create_passthrough_mapping(column='name', col_type='String', vp='NODE_LABEL')\n",
    "\n",
    "# Discrete mapping: Simply prepare key-value pairs and send it\n",
    "kv_pair = {\n",
    "    'pp': 'pink',\n",
    "    'pd': 'green'\n",
    "}\n",
    "style1.create_discrete_mapping(column='interaction', \n",
    "                               col_type='String', vp='EDGE_STROKE_UNSELECTED_PAINT', mappings=kv_pair)\n",
    "\n",
    "# Continuous mapping\n",
    "points = [\n",
    "    {\n",
    "        'value': '1.0',\n",
    "        'lesser':'white',\n",
    "        'equal':'white',\n",
    "        'greater': 'white'\n",
    "    },\n",
    "    {\n",
    "        'value': '20.0',\n",
    "        'lesser':'green',\n",
    "        'equal':'green',\n",
    "        'greater': 'green'\n",
    "    }\n",
    "]\n",
    "\n",
    "minimal_style = cy.style.create('Minimal')\n",
    "minimal_style.create_continuous_mapping(column='Degree', col_type='Double', vp='NODE_FILL_COLOR', points=points)\n",
    "\n",
    "# Or, use utility for simple mapping\n",
    "simple_slope = StyleUtil.create_slope(min=1, max=20, values=(10, 60))\n",
    "minimal_style.create_continuous_mapping(column='Degree', col_type='Double', vp='NODE_SIZE', points=simple_slope)\n",
    "\n",
    "# Apply the new style\n",
    "cy.style.apply(minimal_style, scale_free100)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Layouts\n",
    "Currently, this supports automatic layouts with default parameters."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "# Get list of available layout algorithms\n",
    "layouts = cy.layout.get_all()\n",
    "print(json.dumps(layouts, indent=4))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "# Apply layout\n",
    "cy.layout.apply(name='circular', network=yeast1)\n",
    "\n",
    "yeast1.get_views()\n",
    "yeast_view1 = yeast1.get_first_view()\n",
    "node_views = yeast_view1['elements']['nodes']\n",
    "df3 = pd.DataFrame(node_views)\n",
    "df3.head()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Embed Interactive Widget"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "from py2cytoscape.cytoscapejs import viewer as cyjs\n",
    "cy.layout.apply(network=scale_free100)\n",
    "view1 = scale_free100.get_first_view()\n",
    "view2 = yeast1.get_first_view()\n",
    "# print(view1)\n",
    "cyjs.render(view2, 'default2', background='#efefef')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "# Use Cytoscape.js style JSON\n",
    "cyjs_style = cy.style.get(minimal_style.get_name(), data_format='cytoscapejs')\n",
    "cyjs.render(view1, style=cyjs_style['style'], background='white')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": []
  }
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