allow the display of insertion/deletion base counts #1526
Merged
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
addresses #1498
Adds 4 new config options for alignment tracks:
insertionTextColor
(default: white)showInsertionText
(default: false)deletionTextColor
(default: black)showDeletionText
: (default: false)if both insertion and deletion text are shown via the above options, it may look something like this (example with CCS reads + HTT expansion; ignore the read colours):
there is also a bit of logic to decide when to stop drawing these labels when the user is zoomed out enough.
this also changes bases to be drawn on top of insertions/deletions to match the Java version. this can be reverted fairly easily if desired. gaps are now also drawn underneath insertions to display more intuitively.
If this PR is merged, I agree to transfer the copyright of these changes to the copyright holders of the
igv.js
repository.