not responding under Windows 10 - version 1.4.0.post1-gpu

[michael-seg]

I have experienced troubles with adding new images (raw data) in the first step of the workflow: pixel classification
Always "not responding" . Same comes if I want to open a project
Maybe s.o. can help.

[k-dominik]

Hi @michael-seg,

this is definitely not what should happen! Can you maybe post a portion of your log file (Settings -> open log folder)? There could be information there that helps us understand the issue better. Also, what file format are you using? If you can open your image in Fiji, you could use our export plugin to produce an .h5 file that should definitely work!

Hope we can resolve this quickly.

Cheers
D

[michael-seg]

log.txt

I used .tif format

Thank you for your help dominik.
Best
Michael

[michael-seg]

also if i want to export as .hdf5 with your fiji-plugin, this one comes up:

java.lang.IllegalArgumentException: HDF5 export file must have '.h5' suffix
at org.ilastik.ilastik4ij.io.ExportCommand.run(ExportCommand.java:85)
at org.scijava.command.CommandModule.run(CommandModule.java:196)
at org.scijava.module.ModuleRunner.run(ModuleRunner.java:165)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:125)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:64)
at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:247)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:750)
[ERROR] Command errored: Export HDF5

[k-dominik]

Hi @michael-seg,

thank you very much for the log - I could not find anything interesting there - unfortunately.

For the Fiji plugin - you'll have to give the file name an .h5 extension (I guess that part we'll have to improve, xref: ilastik/ilastik4ij#122). I noticed that there is a file picker there when you export, which is inconvenient (as the file does not exist yet and I guess then you're forced to choose something). A workaround until we fix it, would be to select any file there, and manually rename it in the main export dialog:

Do you think you could make available the file you're having trouble with? If you can't share it publicly, drop us a mail at team@ilastik.org and I can send you a private upload link.

Cheers
Dominik

[michael-seg]

also same problem with .h5 files, unfortunetly

log.txt

Kind
Michael

[k-dominik]

Hi @michael-seg - this is odd. Could you please write an email to team@ilastik.org with a reference to this issue?