Running MB-MDR analyses on IMBS cluster

Installation

On local machine:

library(devtools)
install_git("ssh://git@bioweb2.imbs.uk-sh.de:22222/gola/mbmdr.git")

On cluster:

library(devtools)
install_git("ssh://git@10.15.59.180:22222/gola/mbmdr.git")

MB-MDR binaries

You can find MB-MDR binaries here. Install the appropriate binary for your operating system.

Configuration

You have to configure BatchJobs properly. See here and here.

If you want to use one of the internal functions, use the function configure to set the MB-MDR parameters. If you want to use the function mbmdr to run a complete analysis, use the parameters of the function itself.