get_griis #32
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on: | |
schedule: | |
- cron: '0 0 1 1-12 *' | |
workflow_dispatch: | |
name: get_griis | |
jobs: | |
get-griis: | |
runs-on: ${{ matrix.config.os }} | |
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
strategy: | |
fail-fast: false | |
matrix: | |
config: | |
- {os: ubuntu-latest, r: 'release'} | |
env: | |
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
RSPM: ${{ matrix.config.rspm }} | |
GITHUB_TOKEN: ${{ secrets.AUTOMATISATION }} | |
gbif_user: ${{ secrets.GBIF_USER }} | |
email: ${{ secrets.GBIF_EMAIL }} | |
gbif_pwd: ${{ secrets.GBIF_PWD }} | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v3 | |
with: | |
fetch-depth: 0 | |
token: ${{ secrets.AUTOMATISATION }} | |
- name: Setup R | |
uses: r-lib/actions/setup-r@v2 | |
with: | |
r-version: ${{ matrix.config.r }} | |
http-user-agent: ${{ matrix.config.http-user-agent }} | |
- name: Setup pandoc | |
uses: r-lib/actions/setup-pandoc@v2 | |
- name: Install linux libraries | |
run: | | |
sudo apt install libsodium-dev | |
sudo apt-get install libcurl4-openssl-dev | |
sudo apt-get install libgdal-dev libproj-dev | |
sudo apt install libudunits2-dev | |
sudo apt install libharfbuzz-dev | |
sudo apt install libfribidi-dev | |
- name: Install R packages | |
run: | | |
source("src/install_packages_get_griis.R") | |
shell: Rscript {0} | |
- name: download_griis_checklist | |
run: | | |
source("src/download_griis_checklist.R") | |
shell: Rscript {0} | |
- name: Commit and push changes | |
uses: devops-infra/action-commit-push@master | |
with: | |
github_token: ${{ secrets.AUTOMATISATION }} | |
commit_prefix: "[AUTO]" | |
commit_message: "update griis checklist" | |
target_branch: automatic-griis-checklist | |
- name: Get branch name | |
run: | | |
git branch --show-current | |
- name: Create pull request | |
uses: devops-infra/action-pull-request@v0.4.2 | |
with: | |
github_token: ${{ secrets.AUTOMATISATION }} | |
target_branch: uat | |
title: "[AUTO] download griis checklist" | |
template: .github/PR_download_griis_checklist.md | |
reviewer: SanderDevisscher | |
label: automated workflow | |
get_diff: false |