chore: update environment files

README.md

@@ -2,9 +2,9 @@
 
 [![Open In Colab](https://img.shields.io/badge/open%20in-Colab-b5e2fa?logo=googlecolab&style=flat-square&color=ffd670&labelColor=f8f9fa)](https://colab.research.google.com/github/inlab-geo/cofi-examples/blob/main/index.ipynb)
 [![badge](https://img.shields.io/badge/launch-Binder-E66581.svg?logo=data:image/png;base64,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&style=flat-square&labelColor=f8f9fa&color=ffafcc)](https://mybinder.org/v2/gh/inlab-geo/cofi-examples/main?filepath=index.ipynb)
+[![CoFI docs](https://img.shields.io/badge/CoFI%20docs-Tutorials-99EDCC?style=flat-square&labelColor=f8f9fa&logo=readthedocs&logoColor=99EDCC)](https://cofi.readthedocs.io/en/latest/tutorials/generated/index.html)
 [![CoFI docs](https://img.shields.io/badge/CoFI%20docs-Example%20Gallery-bbd0ff?style=flat-square&labelColor=f8f9fa&logo=readthedocs&logoColor=bbd0ff)](https://cofi.readthedocs.io/en/latest/examples/generated/index.html)
 
-
 > Related repositories by [InLab](https://inlab.edu.au/community/):
 > - [CoFI](https://github.com/inlab-geo/cofi)
 > - [Espresso](https://github.com/inlab-geo/espresso)
@@ -31,15 +31,11 @@ This repository contains examples for running inversion algorithms using CoFI wi
 (Strongly recommended) Create a virtual environment to avoid conflicts with your other projects:
 
 ```console
-$ conda env create -f envs/environment.yml
-$ conda activate cofi_env
+$ mamba env create -f envs/environment.yml
+$ mamba activate cofi_env
 ```
 
-> For MacOS M1 users, unfortunately `tetgen` (which is a dependency of `pygimli`) doesn't support
-> ARM machines yet. Please use `conda env create -f envs/environment_arm.yml` instead, and use
-> another X86 machine to run the notebooks that make use of `pygimli`.
-
-Otherwise (skip this if you've followed above), ensure you have `scipy` and `jupyter-lab` in your environment and then install `cofi` with:
+Otherwise (skip this if you've followed above), ensure you have `scipy` and `jupyter-lab` in your environment and then install `cofi` with the following. Install related packages specifically for the notebooks you would like to run.
 
 ```console
 $ pip install cofi
@@ -62,15 +58,19 @@ $ cd cofi-examples
 $ jupyter-lab
 ```
 
-Run through examples and have fun :tada:! We recommend opening up the `index.ipynb` at root folder to decide where to start.
+Run through examples and have fun :tada:! We recommend opening up the [index.ipynb](index.ipynb) to decide where to start.
 
 ## Contribution
 
 Thanks for contributing! Please refer to our [Contributor's Guide](CONTRIBUTING.md) for
 details.
 
-## Troubleshooting for interactive lab
+## Licence
+
+This project is distributed under a 2-clause BSD licence. A copy of this licence is accessible [here](LICENCE).
+
+<!-- ## Troubleshooting for interactive lab
 If you've followed the [instructions on running locally](#run-the-examples-with-cofi-locally)
 above, and are still having trouble ***displaying the ipython widgets***, then hopefully 
 [this StackOverflow thread](https://stackoverflow.com/questions/36351109/ipython-notebook-ipywidgets-does-not-show) 
-will help you. 
+will help you.  -->

envs/environment.yml

@@ -4,20 +4,20 @@ channels:
   - defaults
   - gimli
 dependencies:
-  - python=3.9
+  - python>=3.8
   - jupyterlab>=3
+  - scipy=1.12
   - matplotlib>=3.5.0
   - nodejs>=12
-  - pygimli==1.3.0
-  - simpeg
+  - pygimli>=1.5.0
   - shapely
   - cython
   - cartopy
   - pip
   - pip:
-    - cofi>=0.1.2.dev22
-    - geo-espresso>=0.2.1.dev0 
+    - cofi>=0.2.8
+    - geo-espresso>=0.3.13
     - ipywidgets>=7.7.0
     - tqdm>=4.0
     - seislib>=0.6.7
-    - git+https://github.com/miili/pysurf96.git
+    - git+https://github.com/inlab-geo/pysurf96.git