[Bug]: Exploratory app not working on shinyapps.io

[cicdguy]

What happened?

Accessing https://genentech.shinyapps.io/nest_exploratory_main/ results in an error.

This is because of some missing dependencies needed for deployment of the app.

Relevant log output

2023-02-28T16:37:29.081484+00:00 shinyapps[8358361]: Error in tm_g_distribution("Distribution", dist_var = adsl_extracted_numeric,  : 
2023-02-28T16:37:29.081510+00:00 shinyapps[8358361]:   Cannot load package(s): ggpmisc.
2023-02-28T16:37:29.081514+00:00 shinyapps[8358361]: Install or restart your session.Cannot load package(s): ggpp.
2023-02-28T16:37:29.081519+00:00 shinyapps[8358361]: Install or restart your session.Cannot load package(s): goftest.
2023-02-28T16:37:29.081536+00:00 shinyapps[8358361]: Install or restart your session.

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[pawelru]

This should have been fixed with #8 -> ggpmisc added to the required packages in the DESCRIPTION file. I guess we just need to re-deploy (isn't it automatic btw?)

[cicdguy]

The DESCRIPTION file has no effect on app deployments. All dependency resolutions happen via the RSConnect's manifest.json, which is automatically generated for our apps.

The fix is straightforward where we just need to import the packages in the code.

[pawelru]

I need to reopen as this is still failing. @cicdguy will you be able to check the logs again?

[cicdguy]

This time it's due to the following error:

2023-03-02T09:21:00.485936+00:00 shinyapps[8358361]: The following object is masked from ‘package:rlang’:
2023-03-02T09:21:00.485967+00:00 shinyapps[8358361]:     %||%
2023-03-02T09:21:07.191147+00:00 shinyapps[8358361]: Error in select(., USUBJID, STUDYID, SEX, ARMCD, AVAL, AVISIT, PARAMCD) : 
2023-03-02T09:21:07.191186+00:00 shinyapps[8358361]:   unused arguments (USUBJID, STUDYID, SEX, ARMCD, AVAL, AVISIT, PARAMCD)
2023-03-02T09:21:07.191205+00:00 shinyapps[8358361]: Shiny application exiting ...
2023-03-02T09:21:07.191210+00:00 shinyapps[8358361]: Calls: local ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
2023-03-02T09:21:07.191215+00:00 shinyapps[8358361]: Execution halted

[cicdguy]

Dependencies are all loading as expected, so that is no longer an issue.

[pawelru]

@cicdguy same thing happened again - can you please check the logs?

[cicdguy]

This time around it's ggExtra

2023-03-03T09:51:04.629080+00:00 shinyapps[8358361]: Error in tm_g_scatterplot("Scatterplot", x = adsl_extracted_num, y = adsl_extracted_num2,  : 
2023-03-03T09:51:04.629102+00:00 shinyapps[8358361]:   Cannot load package(s): ggExtra.
2023-03-03T09:51:04.629107+00:00 shinyapps[8358361]: Install or restart your session.
2023-03-03T09:51:04.629110+00:00 shinyapps[8358361]: Calls: local ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
2023-03-03T09:51:04.629118+00:00 shinyapps[8358361]: Execution halted
2023-03-03T09:51:04.629148+00:00 shinyapps[8358361]: Shiny application exiting ...