Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

GATK4 HaplotypeCaller native SmithWaterman: core dumps and JVM errors #113

Closed
nh13 opened this issue Aug 2, 2020 · 2 comments
Closed

GATK4 HaplotypeCaller native SmithWaterman: core dumps and JVM errors #113

nh13 opened this issue Aug 2, 2020 · 2 comments
Labels
bug

Comments

@nh13
Copy link

nh13 commented Aug 2, 2020

See test case in: broadinstitute/gatk#6733
@nh13 nh13 mentioned this issue Aug 3, 2020
Open
@rpomaris
Copy link

@nh13 see comment here: broadinstitute/gatk#6733 (comment)

@Kmannth Kmannth added the bug label Aug 28, 2020
@pkolakow
Copy link
Contributor

pkolakow commented Mar 2, 2021

This issue has been fixed here #142. The patch for this bug will come out with the next release.

@Kmannth Kmannth closed this as completed Mar 4, 2021
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
bug
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
4 participants
@nh13 @rpomaris @Kmannth @pkolakow