Uninitialized pointer in IntelDeflater.cc #89
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@pnvaidya can you please take a look at this? |
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We're working on a new release - will check this and confirm it's resolved with latest version of GKL. |
Kmannth
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Aug 26, 2020
Add an alloction and free block struct in question. Signed-off-by: Keith Mannthey <keith.mannthey@intel.com>
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#114 has an inital fix for this issue. |
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The patch has been landed to Master please retest and let us know if you still see the issue. |
SnehalA
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Sep 23, 2020
* update gatk-native-bindings dependency to 1.0.0
* This is a cosmetic change, 0.1.0-rc-1 was r-released as 1.0.0 once we verified it was ok. It looks less weird to use the release version though.
* Smithwatermen Memory allocation defensive code
Add denfensive code where Memory Alloctions are involved.
This will reduce crashes that happen when memory allocations
fail in SmithWaterman.
Move to _mm_free for memory allocated wtih _mm_malloc.
Signed-off-by: Keith Mannthey <keith.mannthey@intel.com>
* Fix for "Uninitialized pointer in IntelDeflater.cc Intel-HLS#89"
Add an alloction and free block struct in question.
Signed-off-by: Keith Mannthey <keith.mannthey@intel.com>
Co-authored-by: Louis Bergelson <louisb@broadinstitute.org>
Co-authored-by: kmannthe <keith.mannthey@intel.com>
Co-authored-by: Kmannth <32776479+Kmannth@users.noreply.github.com>
Kmannth
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Sep 29, 2020
* update for python utility * Merge (#7) * update gatk-native-bindings dependency to 1.0.0 * This is a cosmetic change, 0.1.0-rc-1 was r-released as 1.0.0 once we verified it was ok. It looks less weird to use the release version though. * Smithwatermen Memory allocation defensive code Add denfensive code where Memory Alloctions are involved. This will reduce crashes that happen when memory allocations fail in SmithWaterman. Move to _mm_free for memory allocated wtih _mm_malloc. Signed-off-by: Keith Mannthey <keith.mannthey@intel.com> * Fix for "Uninitialized pointer in IntelDeflater.cc #89" Add an alloction and free block struct in question. Signed-off-by: Keith Mannthey <keith.mannthey@intel.com> Co-authored-by: Louis Bergelson <louisb@broadinstitute.org> Co-authored-by: kmannthe <keith.mannthey@intel.com> Co-authored-by: Kmannth <32776479+Kmannth@users.noreply.github.com> * minor change * pyutil update * remove extra space Co-authored-by: Louis Bergelson <louisb@broadinstitute.org> Co-authored-by: kmannthe <keith.mannthey@intel.com> Co-authored-by: Kmannth <32776479+Kmannth@users.noreply.github.com>
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Memory at uninitialized pointer is being written to here
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