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Pinned repositories

  1. broadinstitute/gatk

    Official code repository for GATK versions 4 and up

    Java 443 173

  2. samtools/htsjdk

    A Java API for high-throughput sequencing data (HTS) formats.

    Java 169 185

  3. broadinstitute/gatk-native-bindings

    GATK Native Bindings Repository

    Java 3 3

  4. jopt-simple/jopt-simple

    Java library for parsing command line options

    Java 234 54

  5. broadinstitute/barclay

    Command line argument parser and online documentation generation utilities for java command line programs.

    Java 5 2

623 contributions in the last year

Aug Sep Oct Nov Dec Jan Feb Mar Apr May Jun Jul Aug Mon Wed Fri

Contribution activity

August 2018

Created a pull request in broadinstitute/gatk that received 3 comments

Splitting out gatk-testUtils as a separate artifact

this allows us to remove the compile time dependencies minicluster and testng and convert them to dependencies of this new artifact moving utils.te…

+439 −508 3 comments

Created an issue in broadinstitute/gatk that received 11 comments

GATK failing in FireCloud with google ExecutionException (caused by UnknownHostException)

We're seeing a high rate of failures running BQSR pipelines in production with ExecutionExceptions. The root cause seems to be an UnknownHostException


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