Switch branches/tags
Nothing to show
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Failed to load latest commit information.
R add comment explaining why we're logging the xml May 23, 2018
data-raw Add files via upload Jul 28, 2017
data Delete new.txt Jul 28, 2017
inst Delete test_geneanswers.Rmd Aug 2, 2017
man Update InterMineR-methods.Rd Sep 10, 2017
.gitignore ignore RStudio files May 15, 2017
.travis.yml Update .travis.yml Feb 22, 2018
LICENSE Rename LICENCE to LICENSE Aug 23, 2017
README.md fix readme merge error May 23, 2018


Master: Build Status: master Dev: Build Status: dev


R package for accessing InterMine instances


InterMineR has been added to Bioconductor.

To install this package, start R and enter:

## try http:// if https:// URLs are not supported




See HTML vignettes for detailed API and tutorials:

  • vignettes/InterMineR.Rmd
  • vignettes/Enrichment_Analysis_and_Visualization.Rmd
  • vignettes/FlyMine_Genomic_Visualizations.Rmd


  1. Fork it!
  2. Create your feature branch: git checkout -b my-new-feature
  3. Commit your changes: git commit -am 'Add some feature'
  4. Push to the branch: git push origin my-new-feature
  5. Submit a pull request :D


Bing Wang:

  • InterMineR package creation (first edition)
  • Established the first query system (queries as list objects)
  • Vignette creation (first edition)

Konstantinos Kyritsis:

  • InterMineR package update to:
    1. Operate with the InterMine web services.
    2. Comply with the standards of Bioconductor submission.
    3. Retrieve the available Mines from the InterMine registry.
  • Established the second query system (queries as InterMineR-class objects)
  • Addition of enrichment analysis functionality and convertion of the results to GeneAnswer-class objects
  • Addition of functionality for converting InterMineR-retrieved data to GRanges-class and RangedSummarizedExperiment-class objects
  • Additional functions:
    1. simplifyResult function for flattened results display.
    2. listDatasets and getDatasets to retrieve information about the available datasets in each Mine.
  • Vignette update (second edition)
  • Addition of tutorials for Enrichment Analysis and Visualization and FlyMine Genomic Visualizations with InterMineR


LGPL. See LICENSE for details.


Sticker templates are available from BiocStickers - or find us at a conference to pick some up in person.