Update galaxy.rst

intermine · Sep 9, 2019 · b91f3c2 · b91f3c2
1 parent 7a293f5
commit b91f3c2
Showing 1 changed file with 12 additions and 0 deletions.
diff --git a/docs/webapp/third-party-tools/galaxy.rst b/docs/webapp/third-party-tools/galaxy.rst
@@ -68,3 +68,15 @@ welcomeMessage   displays on the homepage when coming from Galaxy  yes
 	to Galaxy from the 'EXPORT' menu in the results page.
 
 .. index:: Galaxy
+
+
+Export data from InterMine to Galaxy 
+------------------------------------
+There are 2 options:
+1. starting from an InterMine instance, e.g. FlyMine, run a query, select the option Export -> Send to Galaxy and the data will be exported in the galaxy instance specified in the Galaxy Location field
+2. starting from Galaxy, use the NEW intermine tool to be redirected to the InterMine registry, select the InterMine instance you want to use to export the data, run the query, select the option Export -> Send to Galaxy and the data will be exported in the Galaxy instance you started from.
+
+
+Export data from Galaxy to InterMine 
+------------------------------------
+Use the NEW InterMine interchange dataset to generate an intermediate file with a tsv-based format, then click on "View InterMine at Registry" to be redirected to the InterMIne registry in order to chose the InterMine instace to export the data to.