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Make Phenolyzer available in simplified view (Nebula) #726

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AlistairNWard opened this issue Mar 16, 2021 · 2 comments
Closed

Make Phenolyzer available in simplified view (Nebula) #726

AlistairNWard opened this issue Mar 16, 2021 · 2 comments
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@AlistairNWard
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It is currently only visible in the Advanced view

@adityaekawade
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I have addressed this issue in a recent commit. How do we deploy it to Nebula?

@AlistairNWard
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I can coordinate with Nebula to update their version. We'll get them to update when the analytics is updated to not include the urls and when #727 is also fixed.

Remember to move issues that are being worked on into the current sprint, so we know what is actually in progress and what is in planning waiting to move across for work.

tonydisera added a commit that referenced this issue Jun 18, 2021
* dev: (72 commits)
  Adding allele frequencies (and maybe also numbers of hets) across ethnic sub-populations. #747
  Adding an opentargets.org link to the External Links section of the gene information. #746 We can have multiple ensembl gene ids returned, so make another ajax request based on the ensembl gene id to make sure it's name matches our gene symbol.
  Adding allele frequencies (and maybe also numbers of hets) across ethnic sub-populations. #747 Provide better separation so that it is clear that allele frequencies are coming from gnomAD genomes.
  Reword info popup on Filter dialog for how filtering on AF works. #747
  Use genome build GRCh38 for platinum demo dataset #750
  Reword info popup on Filter dialog for how filtering on AF works. #747
  Adding allele frequencies (and maybe also numbers of hets) across ethnic sub-populations. #747
  Adding allele frequencies (and maybe also numbers of hets) across ethnic sub-populations. #747
  Adding an opentargets.org link to the External Links section of the gene information. #746
  Adding an opentargets.org link to the External Links section of the gene information. #746
  point to updated revel files in vep-cache
  have clinvar urls source from current backend rather than hard-coded to aws ones
  actually remove files, not just update gitignore
  remove .idea files from commit
  add gnomad back in and fix clinvar extra annotations functionality
  put gnomad back in for clinvar
  change back backend direct
  clinvar track fix - new backend service to pre-filter variants pulled back, rather than front-end filtering - #739
  #739 Check if ClinVar pathogenic variants exceeds 1000 variants and prompt user to continue, suggesting that they view counts instead.
  Make Phenolyzer available in simplified view - Nebula #726
  ...
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