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document JHOVE in the Installation Guide #4861 #4899

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5 changes: 0 additions & 5 deletions conf/jhove/README.txt

This file was deleted.

4 changes: 4 additions & 0 deletions doc/sphinx-guides/source/installation/installation-main.rst
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Expand Up @@ -78,6 +78,10 @@ All the Glassfish configuration tasks performed by the installer are isolated in

**IMPORTANT:** Please note, that "out of the box" the installer will configure the Dataverse to leave unrestricted access to the administration APIs from (and only from) localhost. Please consider the security implications of this arrangement (anyone with shell access to the server can potentially mess with your Dataverse). An alternative solution would be to block open access to these sensitive API endpoints completely; and to only allow requests supplying a pre-defined "unblock token" (password). If you prefer that as a solution, please consult the supplied script ``post-install-api-block.sh`` for examples on how to set it up. See also "Securing Your Installation" under the :doc:`config` section.

Dataverse uses JHOVE_ to help identify the file format (CSV, PNG, etc.) for files that users have uploaded. The installer places files called ``jhove.conf`` and ``jhoveConfig.xsd`` into the directory ``/usr/local/glassfish4/glassfish/domains/domain1/config`` by default and makes adjustments to the jhove.conf file based on the directory into which you chose to install Glassfish.

.. _JHOVE: http://jhove.openpreservation.org

The script is to a large degree a derivative of the old installer from DVN 3.x. It is written in Perl. If someone in the community is eager to rewrite it, perhaps in a different language, please get in touch. :)

Logging In
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Expand Up @@ -139,7 +139,7 @@ The simplest way to install R on RHEL/CentOS 6 systems is with yum, using the EP

EPEL6 provides R-3.3, which is known to work well. Some installations have run EPEL7's former 3.4 release with success, but EPEL7 currently provides R-3.5, a significant release with many new features which may challenge backwards compatibility. You may wish to compile the older 3.3 or 3.4 versions [from source](https://cran.r-project.org/src/base/R-3/).

If you have an installed R 3.3 or 3.4 installation from EPEL, you may lock that version in place using the _yum-plugin-versionlock_ yum plugin, or simply add this line to the "epel" section of /etc/yum.repos.d/epel.repo::
If you have an installed R 3.3 or 3.4 installation from EPEL, you may lock that version in place using the yum versionlock plugin, or simply add this line to the "epel" section of /etc/yum.repos.d/epel.repo::

exclude=R-*,openblas-*,libRmath*

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6 changes: 3 additions & 3 deletions doc/sphinx-guides/source/user/tabulardataingest/csv tsv.rst
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CSV/ TSV
++++++
CSV/TSV
++++++++

.. contents:: |toctitle|
:local:

Ingest of Comma-Separated Values and Tab-Separated Values files as tabular data.
-------------------------------------------------------
--------------------------------------------------------------------------------

Dataverse will make an attempt to turn CSV and TSV files uploaded by the user into tabular data, using the `Apache CSV parser <https://commons.apache.org/proper/commons-csv/>`_.

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2 changes: 1 addition & 1 deletion doc/sphinx-guides/source/user/tabulardataingest/index.rst
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Expand Up @@ -16,4 +16,4 @@ Contents:
stata
rdata
excel
csv/ tsv
csv tsv
1 change: 1 addition & 0 deletions doc/sphinx-guides/source/versions.rst
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:orphan:
.. _guides_versions:

Dataverse Guides Versions
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