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Hotfix: Disable tissue slide image links and add notice banner. #1756

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merged 1 commit into from
May 14, 2021
Merged

Hotfix: Disable tissue slide image links and add notice banner. #1756

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14 changes: 13 additions & 1 deletion blink_sass/pages/_cohorts.sass
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Original file line number Diff line number Diff line change
Expand Up @@ -494,7 +494,16 @@
padding: 0
#selected-files-tokenfield
border: none

.banner-section
.alert
text-align: center
background-color: #FFA000
color: black
margin: 0
padding: 0 20px
.alert-dismissible button.close
padding: 0 20px
color: black
#filter-panel
.panel
.panel-heading
Expand Down Expand Up @@ -534,6 +543,9 @@
white-space: nowrap
overflow: hidden
text-overflow: ellipsis
.disable_tissue_slide_image
pointer-events: none
color: gray
.study-uid
display: block
white-space: nowrap
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14 changes: 14 additions & 0 deletions static/css/style.css
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10 changes: 9 additions & 1 deletion static/js/cohort_filelist.js
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Original file line number Diff line number Diff line change
Expand Up @@ -503,11 +503,19 @@ require([
'</div></td>';
break;
case 'camic_filename':
table_row_data += '<td><div class="col-filename accessible-filename">' +
if (files[i]['datatype'] == 'Tissue slide image') {
table_row_data += '<td><div class="col-filename accessible-filename">' +
'<div><a class="disable_tissue_slide_image">' + files[i]['filename'] +
'<div>[GDC ID: ' + files[i]['file_gdc_id'] + ']</div>' +
'<div class="osmisis" style="display: none;"><i>Currently Unavailable</i></div></a></div>' +
'</div></td>';
} else {
table_row_data += '<td><div class="col-filename accessible-filename">' +
'<div><a href="'+CAMIC_URL+files[i]['file_gdc_id']+'/" target="_blank" rel="noreferrer">' + files[i]['filename'] +
'<div>[GDC ID: ' + files[i]['file_gdc_id'] + ']</div>' +
'<div class="osmisis" style="display: none;"><i>Open in caMicroscope</i></div></a></div>' +
'</div></td>';
}
break;
case 'study_uid':
table_row_data += '<td><div class="study-uid">' +
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16 changes: 16 additions & 0 deletions templates/cohorts/cohort_filelist.html
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Original file line number Diff line number Diff line change
Expand Up @@ -27,6 +27,22 @@

{% block page_header %}
<div class="container">
<div class="banner-section">
<div class="alert alert-dismissible show" role="alert">
<div class="row ">
<div class="col-xs-1"></div>
<div class="col-xs-10">
<strong>All tissue slide images from the TCGA program are currently unavailable for viewing.</strong>
</div>
<div class="col-xs-1">
<button type="button" class="close" data-dismiss="alert" aria-label="Close">
<span aria-hidden="true">&times;</span>
</button>
</div>
</div>
</div>
</div>

{% if cohort %}
<ol class="breadcrumb">
<li><a href="{% url 'dashboard' %}">Your Dashboard</a></li>
Expand Down