Merge pull request #751 from isb-cgc/build_update

Build update
isb-cgc · Nov 16, 2023 · 465564a · 465564a
2 parents 3f4815d + ca4f1df
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diff --git a/docs/requirements.txt b/docs/requirements.txt
@@ -1,2 +1,3 @@
-sphinx==4.2.0
-docutils==0.16
+sphinx==6.2.1
+sphinx-rtd-theme==1.2.2
+docutils==0.18.1
diff --git a/docs/source/sections/HTANNotebooks.rst b/docs/source/sections/HTANNotebooks.rst
@@ -5,7 +5,7 @@ HTAN Notebooks
 `HTAN <https://humantumoratlas.org/>`_ is a National Cancer Institute (NCI)-funded Cancer Moonshot initiative to construct 3-dimensional atlases of the dynamic cellular, morphological, and molecular features of human cancers as they evolve from precancerous lesions to advanced disease (`Cell April 2020 <https://www.sciencedirect.com/science/article/pii/S0092867420303469>`_).
 
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diff --git a/docs/source/sections/HowTos.rst b/docs/source/sections/HowTos.rst
@@ -12,7 +12,7 @@ I'm a novice, how do I...
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@@ -66,7 +66,7 @@ I'm an advanced user, how do I...
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diff --git a/docs/source/sections/MachineLearningNotebooks.rst b/docs/source/sections/MachineLearningNotebooks.rst
@@ -4,7 +4,7 @@ Machine Learning Notebooks
 Machine learning methods have enabled researchers to leverage and integrate the vast amounts of diverse cancer data to reveal new insights, develop better diagnostics, and improve therapy. ISB-CGC offers examples of how to use Google Cloud resources to train and use machine learning models for a variety of cancer applications and datasets.
 
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diff --git a/docs/source/sections/MitelmanDBNotebooks.rst b/docs/source/sections/MitelmanDBNotebooks.rst
@@ -5,7 +5,7 @@ MitelmanDB Notebooks
 The `Mitelman Database of Chromosome Aberrations and Gene Fusions in Cancer <https://mitelmandatabase.isb-cgc.org/>`_  is devoted to genes, chromosomes, and cancer. The Mitelman Database is supported by NCI (National Cancer Institute), the Swedish Cancer Society and the Swedish Childhood Cancer. `The Mitelman Database <https://mitelmandatabase.isb-cgc.org/>`_ is available from ISB-CGC to access and search the data.
 
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diff --git a/docs/source/sections/RegulomeExplorerNotebooks.rst b/docs/source/sections/RegulomeExplorerNotebooks.rst
@@ -6,7 +6,7 @@ Integrated statistical analysis and exploration of multiple genomic and clinical
 Bioinformatics notebooks
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