OpenGenePool is currently on hiatus, it is going to evolve into a plugin for "labstream" which is my new open-source project.
Ruby
MySql
sinatra
haml
json
sequel
shotgun
create a database on your mysql server called 'ogp'. GRANT ALL privileges to 'www-data'@localhost
~> ogp.rb
To test https, I suggest setting up an https-capable web forwarding server/daemon (I use NGINX) and have it point to http://localhost:4567/, ogp is then served from https://localhost/
- point your web browser to http://localhost:4567/initialize/
this will allow you to initialize the databases and set up a superuser account
-
login using the superuser
-
find test genbank files that are in the ./testfile/ directory.
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upload them using the applet at http://localhost:4567/upload/
features:
- Initialization pages.
- Upload of genbank files.
- fork() button.
- full-featured sequence selection, including unusual join()s.
- user-modified graphics settings.
- modification of annotations.
- zero, indexed gap sequence annotation.
- some workspace support.
- "nuke" button for admin reset databases.
VERSION 0.17 (Mid-April) intended milestones
- set user access and restrict functions in the interface.
- find and highlight subsequences in both forward and RC directions.
- restriction sites plugin
- find ORF plugin.
- primers plugin.
- output to genbank.
VERSION 0.2-alpha (End of April) intended milestones
- capability to edit sequences with appropriate cloning tools.
- cut-splice-stitch-gibson operation demonstration
- release on a public website