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This repository has been archived by the owner on May 7, 2020. It is now read-only.
Wayne edited this page May 3, 2017 · 2 revisions

Welcome to the CSATK2 wiki!

Peak type information

1. Broad peaks:

[H3F3A, H3K27me3, H3K36me3, H3K4me1, H3K79me2, H3K9me1, H3K9me2, H3K9me3, H4K20me1]

2. Narrow peaks:

[H2AFZ, H3K27ac, H3K4me2, H3K4me3, H3K9ac, CTCF, MYC]

3. Mix peaks:

[RNA Pol II, SUZ12]

Genome code

ATTENTION: if no need to do GO & Pathway Analysis, any number can be chosen as a genome code,as long as it is bigger than 0.

Species code Species name
14 Anolis carolinensis
15 Anopheles gambiae
16 Aquifex aeolicus
11 Arabidopsis thaliana
17 Ashbya gossypii
18 Bacillus cereus
19 Bacillus subtilis
20 Bacteroides thetaiotaomicron
21 Batrachochytrium dendrobatidis
22 Bos taurus
23 Brachypodium distachyon
24 Bradyrhizobium japonicum
25 Branchiostoma floridae
26 Caenorhabditis briggsae
7 Caenorhabditis elegans
27 Candida albicans
28 Canis familiaris
29 Chlamydia trachomatis
30 Chlamydomonas reinhardtii
31 Chloroflexus aurantiacus
32 Ciona intestinalis
33 Clostridium botulinum
34 Coxiella burnetii
35 Cryptococcus neoformans
5 Danio rerio
36 Daphnia pulex
37 Deinococcus radiodurans
38 Dictyoglomus turgidum
10 Dictyostelium discoideum
39 Dictyostelium purpureum
6 Drosophila melanogaster
13 Emericella nidulans
40 Entamoeba histolytica
41 Equus caballus
12 Escherichia coli
42 Felis catus
43 Fusobacterium nucleatum
4 Gallus gallus
44 Geobacter sulfurreducens
45 Giardia intestinalis
46 Gloeobacter violaceus
47 Glycine max
48 Haemophilus influenzae
49 Halobacterium salinarum
1 Homo sapiens
50 Ixodes scapularis
51 Korarchaeum cryptofilum
52 Leishmania major
53 Leptospira interrogans
54 Listeria monocytogenes
55 Macaca mulatta
56 Methanocaldococcus jannaschii
57 Methanosarcina acetivorans
58 Monodelphis domestica
59 Monosiga brevicollis
2 Mus musculus
60 Mycobacterium tuberculosis
61 Nematostella vectensis
62 Neurospora crassa
63 Ornithorhynchus anatinus
64 Oryza sativa
65 Pan troglodytes
66 Phaeosphaeria nodorum
67 Physcomitrella patens
68 Phytophthora infestans
69 Plasmodium falciparum
70 Populus trichocarpa
71 Pristionchus pacificus
72 Pseudomonas aeruginosa
73 Puccinia graminis
74 Pyrobaculum aerophilum
75 Pyrococcus kodakaraensis
3 Rattus norvegicus
76 Rhodopirellula baltica
8 Saccharomyces cerevisiae
77 Salmonella typhimurium
78 Schistosoma mansoni
9 Schizosaccharomyces pombe
79 Sclerotinia sclerotiorum
80 Shewanella oneidensis
81 Solanum lycopersicum
82 Sorghum bicolor
83 Staphylococcus aureus
84 Streptococcus pneumoniae
85 Streptomyces coelicolor
86 Strongylocentrotus purpuratus
87 Sulfolobus solfataricus
88 Sus scrofa
89 Synechocystis
90 Takifugu rubripes
91 Tetrahymena thermophila
92 Thalassiosira pseudonana
93 Thermodesulfovibrio yellowstonii
94 Thermotoga maritima
95 Trichomonas vaginalis
96 Trichoplax adhaerens
97 Trypanosoma brucei brucei
98 Ustilago maydis
99 Vibrio cholerae
100 Vitis vinifera
101 Xanthomonas campestris
102 Xenopus tropicalis
103 Yarrowia lipolytica
104 Yersinia pestis
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