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Vessel Clipper

Clip vessel surface with user input centerlines. This repository is a GUI version of the Vessel Centerline Extraction. Extra functions like surface clipping, domain defining are also included for CFD and morphological analysis purposes.

Features

  • Centerline and geometry calculation
  • Clip user input vessel surfaces (.VTK, .VTP, .STL) with pre-defined centerline file (.VTP, .VTK).
  • Clipped surface enclosing (capping)
  • Output domain for CFD region definitions

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Example Usages

  • Centerline Calculation
  • Surface Clipping
  • Boundary Extension
  • Domain Define for CFD simulation

Pre-build binary

Build from Source

Toolchain dependency:

  • MSVC 2015 Update 3(Windows)
  • CMake 3.11 or above
  • Qt 5.9 or above
  • VTK 8.0 (VTK 7.0 cannot save capped STL surface properly)
  • ITK
  • VMTK
  • nlohmann_json(if CMake version below 3.11)
  1. Complete CMake Medical Imaging Toolchain for Windows (MSVC2015).
  2. nlohmann_json will be automatically fetched if CMake version is >= 3.11. Older CMake version need to use pre-built toolchain, check usage in official repo.

Known issue

  • nlohmann_json is picky with C++ compilers. For MSVC 2015 users, make sure version is using Update 3.

To-do List

  • Add cylindrical clipper
  • Boundary extension

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Clip vessel surface with user input centerlines

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