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Update README.md
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jakalssj3 committed Sep 20, 2023
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Expand Up @@ -94,7 +94,6 @@ load(paste0(my_wpath,"aims_pam50_annotations.Rdata"))

targets <- readxl::read_xlsx(paste0(my_wpath,"BMC_BCR_Additional_File1_13SEP2023.xlsx"),
sheet=3, skip=1, trim_ws=T)
## The below has to be added to the table manually, and removed from the code
targets$EntrezID <- as.character(gtf$EntrezID[match(targets$`Gencode.v35 (c)`, gtf$gene_id)])
targets$EntrezID[targets$`Ensembl_ID (b)`=="ENSG00000253167"] <- "106479020"
targets$EntrezID[targets$`Ensembl_ID (b)`=="ENSG00000270141"] <- "7012"
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