Updating docker build

.github/workflows/build_docker.yml

@@ -47,7 +47,7 @@ jobs:
             jakobilab/circtools:master
             ghcr.io/jakobilab/circtools/circtools:master
           # build on feature branches, push only on main branch
-          push: ${{ github.ref == 'refs/heads/devel' }}
+          push: ${{ github.ref == 'refs/heads/master' }}
 
       - name: Image digest
         run: echo ${{ steps.docker_build.outputs.digest }}

docker/Dockerfile

@@ -36,7 +36,7 @@ RUN apt-get update; DEBIAN_FRONTEND=noninteractive TZ=America/Phoenix apt-get in
 
 #RUN git clone https://github.com/jakobilab/circtools.git ; ls -la circtools/; wget https://bootstrap.pypa.io/get-pip.py; python3 get-pip.py; rm get-pip.py; python3 -m pip install -U setuptools pip numpy; python3 -m pip install circtools/; bash /circtools/scripts/install_external.sh; Rscript /circtools/scripts/install_R_dependencies.R; pip cache purge; apt-get purge python3-dev; apt-get autoremove; apt-get autoclean; rm -rf /var/lib/apt/lists/*; rm circtools/ -rf;
 
-RUN git clone https://github.com/jakobilab/circtools.git ; ls -la circtools/; wget https://bootstrap.pypa.io/get-pip.py; python3 get-pip.py; rm get-pip.py; python3 -m pip install -U setuptools pip numpy; python3 -m pip install circtools/; bash circtools/circtools/scripts/install_external.sh; pip cache purge; apt-get purge python3-dev; apt-get autoremove; apt-get autoclean; rm -rf /var/lib/apt/lists/*; rm circtools/ -rf;
+RUN git clone https://github.com/jakobilab/circtools.git ; ls -la circtools/; wget https://bootstrap.pypa.io/get-pip.py; python3 get-pip.py; rm get-pip.py; python3 -m pip install -U setuptools pip numpy; python3 -m pip install circtools/; wget https://github.com/arq5x/bedtools2/releases/download/v2.30.0/bedtools.static.binary -O /usr/bin/bedtools; pip cache purge; apt-get purge python3-dev; apt-get autoremove; apt-get autoclean; rm -rf /var/lib/apt/lists/*; rm circtools/ -rf;
 
 USER circtools