tabtk utils using klib
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README.md
tabtk_agg
tabtk_bins
tabtk_decorate
tabtk_join
tabtk_nlines
tabtk_subset
tabtk_uniq
tabtk_xlsx
tsv-utils

README.md

tabtk_xlsx

interface:

$ tabtk_xlsx
Usage: tabtk_xlsx  <xlsx> <sheet:file_path> [<sheet:file_path>]
version: 0.0.1

benchmark and usage:

$ time  tabtk_xlsx.py  ncbi.map.xlsx  ncbi:ncbi.map
real    2m47.532s
user    2m46.537s
sys     0m0.829s

$time  tabtk_xlsx  ncbi.map.xlsx  ncbi:ncbi.map
real    0m12.577s
user    0m11.980s
sys     0m0.582s

$ tabtk_xlsx  taxonomy.xlsx  phylum:phylum.txt order:order.txt  genus:genus.txt species:species.txt

tabtk_join

interface:

$ tabtk_join
Usage: tabtk_join [options] [text ...]
Options:
  -p CHAR  placehold for missing value, default: ['-'];
  -v       print version number

tabtk_agg

interface:

$ tabtk_agg
Usage: tabtk_agg [options] [label:text ...]
Options:
  -k STR  the keys fields pattern: 1:2:3, default: [1];
  -t STR  the titles for keys: key_1:key_2:key_3, default: [catalog];
  -c INT  the target column default: [2];
  -p CHAR placehold for missing value: default ['0'];
  -i      ignore the head line;
  -v      print version number