Author: LEI ZHANG
current version: version:0.0.1-r2
$ tsv-utils
Usage: tsv-utils <command> <arguments>
Version: 0.0.1-r2
Command:
-- Combination
agg combinate multi-file.
join join tables with primery key.
tsv2xlsx convert (multi-)tsv file to Excel file.
-- Numeric data frame
rank rank/merge for numeric table.
abundance calculate relative abundance for numeric table.
norm normalization with counts map and normalization
factor for numeric table.
stand standardization for numeric table.
melt merge values with bin table file.
distribution calculate bins feature distribution.
trim trim rows using cutoff.(sum operation).
nfilter filter using value with specied collum. op: >= | <= .
-- Editing
annotation annotating specify collum with key/value(s) db.
links transform annotation with links map and definitions.
associate associate with links map.
definition adding definition collum with key/value(s) db.
replace replace specify collum elements with key/value(s) db.
reorder reorder rows by specify key in specify collum.
subset retrieve ids in/not in list file [row].
subcolumn retrieve ids in/not in list file [collum].
collapse collapse '\t' separator to specify delim.
add_headline add headline.
groupline add groupline.
placehold fill empty cell with specify STR.
reshape reshape and bin using map file.
-- Matrix Operation
transpose matrix transpose.
submatrix submatrix by id.
matrix2tab binary format.
matrix2melt elements in submatrix using metadata.
-- Summary
cut print selected parts of lines.
bins uniq/bin/summary.
uniq unique specify collum and counts.
nlines calculate lines of file.
stats calculate stats for selected collum.
unpack unpack the bins files.
-- auxiliary utils.
view View text file, ignor comments and blank lines.
Licenced:
(c) 2018-2020 - LEI ZHANG
Logic Informatics Co.,Ltd.
zhanglei@logicinformatics.com