comparison

Repository contaning data for the comparison of 2 R-loop algorithms

QmRLFS finder (method: time util)

• 100 kB python2 QmRLFS-finder.py --model m1,m2 -i 100k.fasta -o 100k.out 20,49s user 0,02s system 99% cpu 20,512 total
• 300 kB python2 QmRLFS-finder.py --model m1,m2 -i 300k.fasta -o 300k.out 31,53s user 0,01s system 99% cpu 31,538 total
• 500 kB python2 QmRLFS-finder.py --model m1,m2 -i 500k.fasta -o 500k.out 50,03s user 0,02s system 99% cpu 50,065 total
• 750 kB 109,8 s
• 1 MB python2 QmRLFS-finder.py --model m1,m2 -i 1m.fasta -o 1m.out 190,96s user 0,03s system 99% cpu 3:11,02 total
• 3 MB 930 s
• 5 MB python2 QmRLFS-finder.py --model m1,m2 -i 5m.fasta -o 5m.out 1570,24s user 0,10s system 99% cpu 26:10,82 total
• 10 MB python2 QmRLFS-finder.py --model m1,m2 -i 10m.fasta -o 10m.out 2909,51s user 0,09s system 99% cpu 48:29,78 total

DNA-Analyser (public server) (method: log diff)

• 100 kB
  • 2021-09-22 21:40:08 [http-nio-80-exec-1] /api/analyse/rloopr POST
  • 2021-09-22 21:40:15 [http-nio-80-exec-3] /api/analyse/rloopr/df9d3cff-487b-4efc-9864-dc28190e6da4/heatmap?segments=80&from=0&to=100909 GET
• 300 kB
  • 2021-09-22 21:44:56 [http-nio-80-exec-2] /api/analyse/rloopr POST
  • 2021-09-22 21:45:03 [http-nio-80-exec-2] /api/analyse/rloopr/e04d905f-dcf2-4eb9-9dd2-b3e1a23e496c/heatmap?segments=80&from=0&to=302824 GET
• 500 kB
  • 2021-09-22 21:47:38 [http-nio-80-exec-8] /api/analyse/rloopr POST
  • 2021-09-22 21:47:45 [http-nio-80-exec-8] /api/analyse/rloopr/ec49eb5d-f7a3-4f67-be12-682b49c77a63/heatmap?segments=80&from=0&to=504740 GET
• 750 kB
  • 2021-09-23 21:11:13 [http-nio-80-exec-1] /api/analyse/rloopr POST
  • 2021-09-23 21:11:24 [http-nio-80-exec-7] /api/analyse/rloopr/f2bfdfc0-ff72-4a5b-bbd7-25b8295d28c1/heatmap?segments=80&from=0&to=757134 GET
• 1 MB
  • 2021-09-22 21:48:37 [http-nio-80-exec-3] /api/analyse/rloopr POST
  • 2021-09-22 21:48:56 [http-nio-80-exec-5] /api/analyse/rloopr/18bdd6be-4a0a-40da-a046-128bfb731f2b/heatmap?segments=80&from=0&to=1033759 GET
• 3 MB
  • 2021-09-23 21:08:29 [http-nio-80-exec-8] /api/analyse/rloopr POST
  • 2021-09-23 21:09:28 [http-nio-80-exec-4] /api/analyse/rloopr/487e9ea9-502e-4615-a4ff-ecaf78a29a8f/heatmap?segments=80&from=0&to=3101373 GET
• 5 MB
  • 2021-09-22 21:50:04 [http-nio-80-exec-1] /api/analyse/rloopr
  • 2021-09-22 21:51:33 [http-nio-80-exec-5] /api/analyse/rloopr/fad9f599-c2d0-4ce3-95b7-a8a4d9968a81/heatmap?segments=80&from=0&to=5168988 GET
• 10 MB
  • 2021-09-22 21:52:42 [http-nio-80-exec-3] /api/analyse/rloopr POST
  • 2021-09-22 21:55:41 [http-nio-80-exec-9] /api/analyse/rloopr/84993753-a583-4133-aef6-4b3cb00bbea0/heatmap?segments=80&from=0&to=10338024 GET