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Merge pull request #24 from jasenfinch/devel
v0.6.0
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,46 @@ | ||
| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | ||
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
| on: | ||
| push: | ||
| branches: [main, master] | ||
| pull_request: | ||
| branches: [main, master] | ||
| release: | ||
| types: [published] | ||
| workflow_dispatch: | ||
|
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| name: pkgdown | ||
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| jobs: | ||
| pkgdown: | ||
| runs-on: ubuntu-latest | ||
| # Only restrict concurrency for non-PR jobs | ||
| concurrency: | ||
| group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }} | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
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| - uses: r-lib/actions/setup-pandoc@v2 | ||
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| - uses: r-lib/actions/setup-r@v2 | ||
| with: | ||
| use-public-rspm: true | ||
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| - uses: r-lib/actions/setup-r-dependencies@v2 | ||
| with: | ||
| extra-packages: any::pkgdown, local::. | ||
| needs: website | ||
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| - name: Build site | ||
| run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE) | ||
| shell: Rscript {0} | ||
|
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| - name: Deploy to GitHub pages 🚀 | ||
| if: github.event_name != 'pull_request' | ||
| uses: JamesIves/github-pages-deploy-action@v4.4.1 | ||
| with: | ||
| clean: false | ||
| branch: gh-pages | ||
| folder: docs |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,50 @@ | ||
| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | ||
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
| on: | ||
| push: | ||
| branches: [main, master] | ||
| pull_request: | ||
| branches: [main, master] | ||
|
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| name: test-coverage | ||
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| jobs: | ||
| test-coverage: | ||
| runs-on: ubuntu-latest | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
|
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||
| steps: | ||
| - uses: actions/checkout@v3 | ||
|
|
||
| - uses: r-lib/actions/setup-r@v2 | ||
| with: | ||
| use-public-rspm: true | ||
|
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| - uses: r-lib/actions/setup-r-dependencies@v2 | ||
| with: | ||
| extra-packages: any::covr | ||
| needs: coverage | ||
|
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| - name: Test coverage | ||
| run: | | ||
| covr::codecov( | ||
| quiet = FALSE, | ||
| clean = FALSE, | ||
| install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package") | ||
| ) | ||
| shell: Rscript {0} | ||
|
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| - name: Show testthat output | ||
| if: always() | ||
| run: | | ||
| ## -------------------------------------------------------------------- | ||
| find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true | ||
| shell: bash | ||
|
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| - name: Upload test results | ||
| if: failure() | ||
| uses: actions/upload-artifact@v3 | ||
| with: | ||
| name: coverage-test-failures | ||
| path: ${{ runner.temp }}/package |
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| Original file line number | Diff line number | Diff line change |
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@@ -4,3 +4,4 @@ | |
| .Ruserdata | ||
| the_test | ||
| test | ||
| docs | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,31 +1,31 @@ | ||
| Package: projecttemplates | ||
| Title: Project Templates for Reproducible Research and Analyses | ||
| Version: 0.5.8 | ||
| Version: 0.6.0 | ||
| Authors@R: | ||
| person(given = "Jasen", | ||
| family = "Finch", | ||
| role = c("aut", "cre"), | ||
| email = "jsf9@aber.ac.uk") | ||
| Description: Project templates for reproducible research and analyses. | ||
| URL: https://github.com/jasenfinch/projecttemplates | ||
| URL: https://jasenfinch.github.io/projecttemplates/ | ||
| BugReports: https://github.com/jasenfinch/projecttemplates/issues | ||
| License: GPL-3 | ||
| Encoding: UTF-8 | ||
| RoxygenNote: 7.1.2 | ||
| Imports: glue, | ||
| Roxygen: list(markdown = TRUE) | ||
| RoxygenNote: 7.2.3 | ||
| Imports: callr, | ||
| gert, | ||
| gh, | ||
| glue, | ||
| lubridate, | ||
| magrittr, | ||
| pacman, | ||
| renv, | ||
| rstudioapi, | ||
| stringr, | ||
| styler, | ||
| callr, | ||
| gh, | ||
| gert | ||
| yaml | ||
| Suggests: | ||
| testthat, | ||
| covr, | ||
| devtools, | ||
| wordcountaddin | ||
| Remotes: benmarwick/wordcountaddin |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,29 @@ | ||
| #' Add project .Rprofile | ||
| #' @description Add a template .Rprofile file to a project directory. | ||
| #' @param project_directory the project directory file path | ||
| #' @param renv add infrastructure for renv package environment management | ||
| #' @examples | ||
| #' \dontrun{ | ||
| #' projectSkeleton(paste0(tempdir(),'/test_project')) | ||
| #' Rprofile(paste0(tempdir(),'/test_project')) | ||
| #' } | ||
| #' @export | ||
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| Rprofile <- function(project_directory, | ||
| renv = TRUE){ | ||
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| if (isTRUE(renv)){ | ||
| renv_restore <- 'renv::restore()' | ||
| } else { | ||
| renv_restore <- '' | ||
| } | ||
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| script <- glue(' | ||
| {scriptHeader()} | ||
| {renv_restore} | ||
| library(targets) | ||
| library(jfmisc,include.only = "%>%") | ||
| ') | ||
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| write(script,file = paste0(project_directory,'/.Rprofile')) | ||
| } |
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