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v0.6.0 #24

Merged
merged 29 commits into from
Feb 23, 2023
Merged

v0.6.0 #24

merged 29 commits into from
Feb 23, 2023

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jasenfinch
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@jasenfinch
bump version to 0.6.0
f334495
@jasenfinch
added script completion message to run.R template
33efc26
@jasenfinch
output run.R to misc folder
2256406
@jasenfinch
use tarchetypes directly
b1539d4
@jasenfinch
move docker infrastructure to misc/docker and create docker image bui…
7f71813 
…ld and contianer run scripts
@jasenfinch
use jfmisc::writingChecks
ae198fd
@jasenfinch
update template README
f7c9013
@jasenfinch
Move renv restore, package and function loading to .Rprofile
cdc9a6a
@jasenfinch
use renv::init bioconductor argument
fc5fb83
@jasenfinch
added targetsConfig() to add a _targets.yaml config file to a project…
ee4f6a6 
… template
@jasenfinch
fixed figures, tables and supplementary outputs for manuscript template
6984d9e
@jasenfinch
fix missing bioconductor argument in renvInitialise and add missing r…
3929c67 
…env::hydrate command to add missing dependencies after initialisation
@jasenfinch
add missing knitr dependency in output
78bec24
@jasenfinch
move utils.R and functions load to _targets.R. Load the targets packa…
f1ee7da 
…ge and the magrittr %>% from the jfmisc package in the .Rprofile file
@jasenfinch
remove the renv and install arguments form Rprofile
9e9cdd5
@jasenfinch
ensure that the jfmisc package is installed for the report and presen…
3fd9c49 
…tation templates
@jasenfinch
removed redundant code from Rprofile()
1f2dfdf
@jasenfinch
check fix
fc86e89
@jasenfinch
use renv in unit tests
7685504
@jasenfinch
Update github actions workflow
0468374
@jasenfinch
add test coverage actions workflow
be2e37e
@jasenfinch
use github actions for deploying pkgdown site
825facf
@jasenfinch
update package NEWS
514153d
@jasenfinch
README edits
e02ebdf
@jasenfinch
rename the github argument of renvInitialise to dependencies
8758abd
@jasenfinch
update documentation
d41b068
@jasenfinch
remove docs
135c830
@jasenfinch
add to README
f474508
@jasenfinch
README fix
8e26595
@jasenfinch jasenfinch merged commit e89c442 into master Feb 23, 2023
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@jasenfinch