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v0.6.0 #24

Merged
merged 29 commits into from
Feb 23, 2023
Merged

v0.6.0 #24

merged 29 commits into from
Feb 23, 2023

Commits on May 30, 2022

  1. bump version to 0.6.0

    @jasenfinch
    jasenfinch committed May 30, 2022
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  2. added script completion message to run.R template

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    jasenfinch committed May 30, 2022
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  3. output run.R to misc folder

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    jasenfinch committed May 30, 2022
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  4. use tarchetypes directly

    @jasenfinch
    jasenfinch committed May 30, 2022
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  5. move docker infrastructure to misc/docker and create docker image bui… 

    …ld and contianer run scripts
    @jasenfinch
    jasenfinch committed May 30, 2022
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  6. use jfmisc::writingChecks

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    jasenfinch committed May 30, 2022
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  7. update template README

    @jasenfinch
    jasenfinch committed May 30, 2022
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  8. Move renv restore, package and function loading to .Rprofile

    @jasenfinch
    jasenfinch committed May 30, 2022
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  9. use renv::init bioconductor argument

    @jasenfinch
    jasenfinch committed May 30, 2022
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Commits on Dec 1, 2022

  1. added targetsConfig() to add a _targets.yaml config file to a project… 

    … template
    @jasenfinch
    jasenfinch committed Dec 1, 2022
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  2. fixed figures, tables and supplementary outputs for manuscript template

    @jasenfinch
    jasenfinch committed Dec 1, 2022
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  3. fix missing bioconductor argument in renvInitialise and add missing r… 

    …env::hydrate command to add missing dependencies after initialisation
    @jasenfinch
    jasenfinch committed Dec 1, 2022
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  4. add missing knitr dependency in output

    @jasenfinch
    jasenfinch committed Dec 1, 2022
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  5. move utils.R and functions load to _targets.R. Load the targets packa… 

    …ge and the magrittr %>% from the jfmisc package in the .Rprofile file
    @jasenfinch
    jasenfinch committed Dec 1, 2022
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  6. remove the renv and install arguments form Rprofile

    @jasenfinch
    jasenfinch committed Dec 1, 2022
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  7. ensure that the jfmisc package is installed for the report and presen… 

    …tation templates
    @jasenfinch
    jasenfinch committed Dec 1, 2022
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  8. removed redundant code from Rprofile()

    @jasenfinch
    jasenfinch committed Dec 1, 2022
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  9. check fix

    @jasenfinch
    jasenfinch committed Dec 1, 2022
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  10. use renv in unit tests

    @jasenfinch
    jasenfinch committed Dec 1, 2022
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  11. Update github actions workflow

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    jasenfinch committed Dec 1, 2022
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  12. add test coverage actions workflow

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    jasenfinch committed Dec 1, 2022
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  13. use github actions for deploying pkgdown site

    @jasenfinch
    jasenfinch committed Dec 1, 2022
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  14. update package NEWS

    @jasenfinch
    jasenfinch committed Dec 1, 2022
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  15. README edits

    @jasenfinch
    jasenfinch committed Dec 1, 2022
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Commits on Jan 16, 2023

  1. rename the github argument of renvInitialise to dependencies

    @jasenfinch
    jasenfinch committed Jan 16, 2023
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  2. update documentation

    @jasenfinch
    jasenfinch committed Jan 16, 2023
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Commits on Feb 23, 2023

  1. remove docs

    @jasenfinch
    jasenfinch committed Feb 23, 2023
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  2. add to README

    @jasenfinch
    jasenfinch committed Feb 23, 2023
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  3. README fix

    @jasenfinch
    jasenfinch committed Feb 23, 2023
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