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OpenBEL is an open source and open community project providing BEL (Biological Expression Language) and a set of tools to process/store biological knowledge. As BEL expressions may become very complex, our project aims to develop a web visualization tool for BEL graph to enhance user's comprehension and interaction, using HTML5 and Javascript li…
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README.md

OpenBEL - Web Tools

OpenBEL is an open source and open community project providing BEL (Biological Expression Language) and a set of tools to process/store biological knowledge. As BEL expressions may become very complex, our project aims to develop a web visualization tool for BEL graph to enhance user's comprehension and interaction, using HTML5 and Javascript libraries.

  1. Setup

Environment Ruby >= 2.1.2 Rails >= 4.1.4

After cloning this project follow these steps:

  • bundle install (installs all needed gems)
  • Configure config/database.yml (details here)
    • example configuration:
    development:
      adapter: mysql2
      encoding: utf8
      database: openbel_webtools
      username: root
      password:
      host: 127.0.0.1
      port: 3306
  • rake db:migrate (setup your database)
  • rails s (run server)
  • access localhost:3000 to see if everything is working
  • Enjoy!
  1. Graph Structure

This project make use of JSON Graph Specification Project (http://json-graph-format.info/) to make BEL files graphs available for multi-purpose use.

  1. Graph Plugins

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