Bug Fix Release 1.3.2

README

@@ -13,6 +13,17 @@ Please visit the project's wiki page at http://wiki.github.com/jcvi/METAREP
 for additional information
 
 RELEASE NOTES 
+
+JCVI Metagenomics Reports - Version 1.3.2 (bug fix release)
+
+Bug Fixes:
+
+METAREP-477 Mosaic Plot option was missing in scripts/r/plots.r 
+METAREP-478 Population creation process expected core organization by project ID;
+the process was fixed to work with a root level core organization as 
+generated by the metarep_loader.pl script. 
+--
+
 JCVI Metagenomics Reports - Version 1.3.1
 
 New Feature:
@@ -27,7 +38,7 @@ METAREP-205 sequence export option for search page
 
 Bug Fixes:
 METAREP-408 fix compare panel misalignment
-
+--
 
 JCVI Metagenomics Reports - Version 1.2.0
 
@@ -43,7 +54,7 @@ METAREP-248 - Implemented PHP based load balancing option
 
 Bug
 METAREP-246 - Fix View Download Cache Issue
-
+--
 
 JCVI Metagenomics Reports - Version 1.1.0
 
@@ -56,3 +67,4 @@ METAREP-220 - Fixed search example links in search help dialog
 METAREP-221 - Use new radio buttons in compare page to limit selection to project datasets
 METAREP-223 - Compare datasets using Wilcoxon Rank Sum Test
 METAREP-224 - Ajax support for search dataset pages
+--

README~

@@ -0,0 +1,58 @@
+METAREP DIRECTORIES
+/app     web application files
+/cake    cake framework files
+/data    example datasets
+/scripts perl and R scripts
+/doc     documentation
+/db      relational databases  
+/solr    solr/lucene configuration files
+/vendors 3rd-party php tools
+
+ADDTIONAL INFORMATION
+Please visit the project's wiki page at http://wiki.github.com/jcvi/METAREP
+for additional information
+
+RELEASE NOTES 
+JCVI Metagenomics Reports - Version 1.3.1
+
+New Feature:
+METAREP-391 update viral evidence summary for view page
+METAREP-409 update NCBI taxonomy, KEGG, GO, and enzymes:
+
+NCBI taxonomy version 09/30/2011: 280,602 new taxa KEGG version 09/01/2011: 21 new KEGG KO pathways; 1 new KEGG EC pathway Gene Ontology version 09/05/2011
+
+METAREP-407 implement GO slim support for compare page
+METAREP-406 implement mosaic plot option for compare page
+METAREP-205 sequence export option for search page
+
+Bug Fixes:
+METAREP-408 fix compare panel misalignment
+
+
+JCVI Metagenomics Reports - Version 1.2.0
+
+Improvement
+METAREP-244 - Increased speed of web page build-up
+METAREP-247 - Integrate new METAREP logo into web layout
+
+New Feature
+METAREP-228 - Added unresolved taxonomy fractions to Browse APIS pages
+METAREP-243 - Search datasets using name based searches for Taxonomy, HMM, Enzymes, GO and KEGG pathway names
+METAREP-245 - Added search option to filter Browse Taxonomy/GO/Pathway/EC pages
+METAREP-248 - Implemented PHP based load balancing option
+
+Bug
+METAREP-246 - Fix View Download Cache Issue
+
+
+JCVI Metagenomics Reports - Version 1.1.0
+
+New Feature
+METAREP-215 - Search all datasets option; generate meta-information summaries
+METAREP-217 - Allow users to test METAREP without creating an account
+METAREP-218 - Allow distance matrix export for hierarchical clustering, heatmap, mds plots
+METAREP-219 - Added color legend to heatmap
+METAREP-220 - Fixed search example links in search help dialog
+METAREP-221 - Use new radio buttons in compare page to limit selection to project datasets
+METAREP-223 - Compare datasets using Wilcoxon Rank Sum Test
+METAREP-224 - Ajax support for search dataset pages