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Weird traceback/cigar #22
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To help troubleshooting, I can add that when I simply reverse the strings, i.e., aligning
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oh, my bad! I just realized that I need to use semi-global to get the results that I want.. |
You beat me to it, I was going to suggest semi-global. Glad you found it!
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oh, my bad! I just realized that I need to use semi-global to get the results that I want..
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Hi, I'm observing strange cigars on some of my alignments. They usually have a long deletion at the end and matches the very last base pair. I've attached one of the examples below and have a handful more if you want additional cases.
I would not expect the last 321D stretch as s1 and s2 matches perfectly in the ends. Here is the result:
Any idea what causes this? Thanks for your time!
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