GitHub - jensfriisnielsen/sequence_recurrence: Identification of known and novel recurrent viral sequences in data from multiple patients and multiple cancers

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Identification of known and novel recurrent viral sequences in data from multiple patients and multiple cancers

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Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
data		data
scripts		scripts
Makefile		Makefile
README		README

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### PUBLICATION
Identification of known and novel recurrent viral sequences in data from multiple patients and multiple cancers

### DEPENDENCIES
cd-hit-est
python2.7
gawk
assembled contigs
BLASTed contigs

### INSTALL
install/create dependencies
setup data/ (see READMEs) 
edit Makefile with significance level

### RUN 
> make clustering
> make feature_associations
> make taxonomy
> make table.txt