TypeError: unbound method error() must be called

[XGuoHI]

TypeError: unbound method error() must be called with ArgumentParser instance as first argument (got str instance instead)

python bin/clinical_filter.py
--child ~/projects/luobingguoA.vcf
--mother ~/projects/zhoufueA.vcf
--father ~/projects/luoleA.vcf
--gender M --dad-aff 1 --mom-aff 1
--export-vcf ./results/child.vcf

[jeremymcrae]

fixed in 9929d60

[XGuoHI]

clinical_filter.py: error: --sum_x_lr2_file must be used
could you explain a little bit OR show an example about the file sum_x_lr2_file ???
Thanks

[XGuoHI]

Hi, Jeremy: I met another issue, could you explain a little bit or show an example for a sum_x_lr2_file ? clinical_filter.py: error: --sum_x_lr2_file must be used Thanks, XIangxue From: Jeremy McRae <notifications@github.com> Sent: Monday, August 20, 2018 6:10 PM To: jeremymcrae/clinical-filter <clinical-filter@noreply.github.com> Cc: Xiangxue Guo <xguo@healthinteractiveinc.com>; Author <author@noreply.github.com> Subject: Re: [jeremymcrae/clinical-filter] TypeError: unbound method error() must be called (#3) fixed in 9929d60<9929d60> — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub<#3 (comment)>, or mute the thread<https://github.com/notifications/unsubscribe-auth/Ai2e_a0XjAE55cluEoF8FymOhQSP88__ks5uSzOggaJpZM4UQyYR>.

[jeremymcrae]

Ah, that option was added recently for a DDD-specific purpose. Probably best to give a path to an empty file.

Specifically it requires a tab-separated file with two columns, first as proband ID, second as mean log 2 ratio on chrom X for the proband, but it only includes probands starting with "DDD". That's why I say just pass an empty file.

Sorry about the delay in fixing the earlier error, development has largely stopped on this, it's just in maintenance mode now.

[XGuoHI]

HI, Jeremy: Thank you so much for your quick reply, I will try to run the program again. Xiang From: Jeremy McRae <notifications@github.com> Sent: Tuesday, August 21, 2018 12:35 PM To: jeremymcrae/clinical-filter <clinical-filter@noreply.github.com> Cc: Xiangxue Guo <xguo@healthinteractiveinc.com>; Author <author@noreply.github.com> Subject: Re: [jeremymcrae/clinical-filter] TypeError: unbound method error() must be called (#3) Ah, that option was added recently for a DDD-specific purpose. Probably best to give a path to an empty file. Specifically it requires a tab-separated file with two columns, first as proband ID, second as mean log 2 ratio on chrom X for the proband, but it only includes probands starting with "DDD". That's why I say just pass an empty file. Sorry about the delay in fixing the earlier error, development has largely stopped on this, it's just in maintenance mode now. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub<#3 (comment)>, or mute the thread<https://github.com/notifications/unsubscribe-auth/Ai2e_XQYW9MUNoynfIK5HNa6jtYA9S4Zks5uTDasgaJpZM4UQyYR>.