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TypeError: unbound method error() must be called #3
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fixed in 9929d60 |
clinical_filter.py: error: --sum_x_lr2_file must be used |
Hi, Jeremy:
I met another issue, could you explain a little bit or show an example for a sum_x_lr2_file ?
clinical_filter.py: error: --sum_x_lr2_file must be used
Thanks,
XIangxue
From: Jeremy McRae <notifications@github.com>
Sent: Monday, August 20, 2018 6:10 PM
To: jeremymcrae/clinical-filter <clinical-filter@noreply.github.com>
Cc: Xiangxue Guo <xguo@healthinteractiveinc.com>; Author <author@noreply.github.com>
Subject: Re: [jeremymcrae/clinical-filter] TypeError: unbound method error() must be called (#3)
fixed in 9929d60<9929d60>
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Ah, that option was added recently for a DDD-specific purpose. Probably best to give a path to an empty file. Specifically it requires a tab-separated file with two columns, first as proband ID, second as mean log 2 ratio on chrom X for the proband, but it only includes probands starting with "DDD". That's why I say just pass an empty file. Sorry about the delay in fixing the earlier error, development has largely stopped on this, it's just in maintenance mode now. |
HI, Jeremy:
Thank you so much for your quick reply, I will try to run the program again.
Xiang
From: Jeremy McRae <notifications@github.com>
Sent: Tuesday, August 21, 2018 12:35 PM
To: jeremymcrae/clinical-filter <clinical-filter@noreply.github.com>
Cc: Xiangxue Guo <xguo@healthinteractiveinc.com>; Author <author@noreply.github.com>
Subject: Re: [jeremymcrae/clinical-filter] TypeError: unbound method error() must be called (#3)
Ah, that option was added recently for a DDD-specific purpose. Probably best to give a path to an empty file.
Specifically it requires a tab-separated file with two columns, first as proband ID, second as mean log 2 ratio on chrom X for the proband, but it only includes probands starting with "DDD". That's why I say just pass an empty file.
Sorry about the delay in fixing the earlier error, development has largely stopped on this, it's just in maintenance mode now.
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Merge pull request #9 from RuthEberhardt/master
Merge pull request #3 from jeremymcrae/master
TypeError: unbound method error() must be called with ArgumentParser instance as first argument (got str instance instead)
python bin/clinical_filter.py
--child ~/projects/luobingguoA.vcf
--mother ~/projects/zhoufueA.vcf
--father ~/projects/luoleA.vcf
--gender M --dad-aff 1 --mom-aff 1
--export-vcf ./results/child.vcf
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