Manually install some packages from conda-forge

To workaround
e-mission/e-mission-docs#511

The solution is in
e-mission/e-mission-docs#511 (comment)

setup/environment36.nomkl.yml

@@ -7,9 +7,7 @@ dependencies:
 - attrdict=2.0.0
 - cheroot=6.2.*=py36_0
 - future=0.16.0
-- geojson=2.3.0
 - google-auth=1.2.1
-- jsonpickle=0.9.6
 - nomkl
 - numpy=1.12.1
 - pandas=0.20.1

setup/environment36.yml

@@ -7,9 +7,7 @@ dependencies:
 - attrdict=2.0.0
 - cheroot=6.2.*=py36_0
 - future=0.16.0
-- geojson=2.3.0
 - google-auth=1.2.1
-- jsonpickle=0.9.6
 - numpy=1.12.1=py36_0
 - pandas=0.20.1=np112py36_0
 - pip=9.0.1=py36_1

setup/setup.sh

@@ -1,8 +1,25 @@
+
 # If the conda binary is not found, specify the full path to it
 # you can find it by searching for "conda" under the miniconda3 directory
 # typical paths are:
 # - on linux: /home/<user>/miniconda3/bin/conda
 # - on OSX: /Users/<user>/miniconda3/bin/conda
 # - on Windows: C:/Users/<user>/Miniconda3/Scripts/conda
+
+echo "Setting up blank environment"
+conda create --name emission python=3.6
+conda activate emission
+
+echo "Downloading packages"
+curl -o /tmp/cachetools-2.1.0-py_0.tar.bz2 -L https://anaconda.org/conda-forge/cachetools/2.1.0/download/noarch/cachetools-2.1.0-py_0.tar.bz2
+curl -o /tmp/geojson-2.3.0-py_0.tar.bz2 -L https://anaconda.org/conda-forge/geojson/2.3.0/download/noarch/geojson-2.3.0-py_0.tar.bz2
+curl -o /tmp/jsonpickle-0.9.6-py_1.tar.bz2 -L https://anaconda.org/conda-forge/jsonpickle/0.9.6/download/noarch/jsonpickle-0.9.6-py_1.tar.bz2
+curl -o /tmp/more-itertools-8.2.0-py_0.tar.bz2 -L https://anaconda.org/conda-forge/more-itertools/8.2.0/download/noarch/more-itertools-8.2.0-py_0.tar.bz2
+curl -o /tmp/pyasn1-0.4.8-py_0.tar.bz2 -L https://anaconda.org/conda-forge/pyasn1/0.4.8/download/noarch/pyasn1-0.4.8-py_0.tar.bz2
+curl -o /tmp/pyasn1-modules-0.2.7-py_0.tar.bz2 -L https://anaconda.org/conda-forge/pyasn1-modules/0.2.7/download/noarch/pyasn1-modules-0.2.7-py_0.tar.bz2
+
+echo "Installing manually downloaded packages"
+conda install /tmp/*.bz2
+
+echo "Updating using conda now"
 conda env update --name emission --file setup/environment36.yml
-source activate emission

setup/setup_nomkl.sh

@@ -4,5 +4,21 @@
 # - on linux: /home/<user>/miniconda3/bin/conda
 # - on OSX: /Users/<user>/miniconda3/bin/conda
 # - on Windows: C:/Users/<user>/Miniconda3/Scripts/conda
+
+echo "Setting up blank environment"
+conda create --name emission python=3.6
+conda activate emission
+
+echo "Downloading packages"
+curl -o /tmp/cachetools-2.1.0-py_0.tar.bz2 -L https://anaconda.org/conda-forge/cachetools/2.1.0/download/noarch/cachetools-2.1.0-py_0.tar.bz2
+curl -o /tmp/geojson-2.3.0-py_0.tar.bz2 -L https://anaconda.org/conda-forge/geojson/2.3.0/download/noarch/geojson-2.3.0-py_0.tar.bz2
+curl -o /tmp/jsonpickle-0.9.6-py_1.tar.bz2 -L https://anaconda.org/conda-forge/jsonpickle/0.9.6/download/noarch/jsonpickle-0.9.6-py_1.tar.bz2
+curl -o /tmp/more-itertools-8.2.0-py_0.tar.bz2 -L https://anaconda.org/conda-forge/more-itertools/8.2.0/download/noarch/more-itertools-8.2.0-py_0.tar.bz2
+curl -o /tmp/pyasn1-0.4.8-py_0.tar.bz2 -L https://anaconda.org/conda-forge/pyasn1/0.4.8/download/noarch/pyasn1-0.4.8-py_0.tar.bz2
+curl -o /tmp/pyasn1-modules-0.2.7-py_0.tar.bz2 -L https://anaconda.org/conda-forge/pyasn1-modules/0.2.7/download/noarch/pyasn1-modules-0.2.7-py_0.tar.bz2
+
+echo "Installing manually downloaded packages"
+conda install /tmp/*.bz2
+
+echo "Updating using conda now"
 conda env update --name emission --file setup/environment36.nomkl.yml
-source activate emission

setup/setup_notebook.sh

@@ -4,6 +4,22 @@
 # - on linux: /home/<user>/miniconda3/bin/conda
 # - on OSX: /Users/<user>/miniconda3/bin/conda
 # - on Windows: C:/Users/<user>/Miniconda3/Scripts/conda
+
+echo "Setting up blank environment"
+conda create --name emission python=3.6
+conda activate emission
+
+echo "Downloading packages"
+curl -o /tmp/cachetools-2.1.0-py_0.tar.bz2 -L https://anaconda.org/conda-forge/cachetools/2.1.0/download/noarch/cachetools-2.1.0-py_0.tar.bz2
+curl -o /tmp/geojson-2.3.0-py_0.tar.bz2 -L https://anaconda.org/conda-forge/geojson/2.3.0/download/noarch/geojson-2.3.0-py_0.tar.bz2
+curl -o /tmp/jsonpickle-0.9.6-py_1.tar.bz2 -L https://anaconda.org/conda-forge/jsonpickle/0.9.6/download/noarch/jsonpickle-0.9.6-py_1.tar.bz2
+curl -o /tmp/more-itertools-8.2.0-py_0.tar.bz2 -L https://anaconda.org/conda-forge/more-itertools/8.2.0/download/noarch/more-itertools-8.2.0-py_0.tar.bz2
+curl -o /tmp/pyasn1-0.4.8-py_0.tar.bz2 -L https://anaconda.org/conda-forge/pyasn1/0.4.8/download/noarch/pyasn1-0.4.8-py_0.tar.bz2
+curl -o /tmp/pyasn1-modules-0.2.7-py_0.tar.bz2 -L https://anaconda.org/conda-forge/pyasn1-modules/0.2.7/download/noarch/pyasn1-modules-0.2.7-py_0.tar.bz2
+
+echo "Installing manually downloaded packages"
+conda install /tmp/*.bz2
+
+echo "Updating using conda now"
 conda env update --name emission --file setup/environment36.yml
 conda env update --name emission --file setup/environment36.notebook.additions.yml
-source activate emission

setup/setup_tests.sh

@@ -5,8 +5,24 @@ echo "Deploying environment in "${CONDA_TEMP_PREFIX}
 echo "Make sure you are running this with conda >=4.2"
 echo "Check with 'conda -V'"
 echo "Upgrade with 'conda update conda' from the *root* environment"
-conda env create --prefix ${CONDA_TEMP_PREFIX} --file setup/environment36.yml
+
+
+echo "Setting up blank environment"
+conda create --prefix ${CONDA_TEMP_PREFIX} python=3.6
 source activate ${CONDA_TEMP_PREFIX}
+
+echo "Downloading packages"
+curl -o /tmp/cachetools-2.1.0-py_0.tar.bz2 -L https://anaconda.org/conda-forge/cachetools/2.1.0/download/noarch/cachetools-2.1.0-py_0.tar.bz2
+curl -o /tmp/geojson-2.3.0-py_0.tar.bz2 -L https://anaconda.org/conda-forge/geojson/2.3.0/download/noarch/geojson-2.3.0-py_0.tar.bz2
+curl -o /tmp/jsonpickle-0.9.6-py_1.tar.bz2 -L https://anaconda.org/conda-forge/jsonpickle/0.9.6/download/noarch/jsonpickle-0.9.6-py_1.tar.bz2
+curl -o /tmp/more-itertools-8.2.0-py_0.tar.bz2 -L https://anaconda.org/conda-forge/more-itertools/8.2.0/download/noarch/more-itertools-8.2.0-py_0.tar.bz2
+curl -o /tmp/pyasn1-0.4.8-py_0.tar.bz2 -L https://anaconda.org/conda-forge/pyasn1/0.4.8/download/noarch/pyasn1-0.4.8-py_0.tar.bz2
+curl -o /tmp/pyasn1-modules-0.2.7-py_0.tar.bz2 -L https://anaconda.org/conda-forge/pyasn1-modules/0.2.7/download/noarch/pyasn1-modules-0.2.7-py_0.tar.bz2
+
+echo "Installing manually downloaded packages"
+conda install /tmp/*.bz2
+
+conda env update --file setup/environment36.yml
 # python bin/deploy/habitica_conf.py
 python bin/deploy/push_conf.py
 python bin/deploy/model_copy.py