Merge pull request e-mission#739 from shankari/setup_fixes

Add scripts to setup and teardown the miniconda version

.github/workflows/test-with-docker.yml

@@ -9,6 +9,9 @@ on:
     branches: [ master ]
   pull_request:
     branches: [ master ]
+  schedule:
+    # * is a special character in YAML so you have to quote this string
+    - cron:  '5 4 * * 0'
 
 # A workflow run is made up of one or more jobs that can run sequentially or in parallel
 jobs:

.travis.yml

@@ -4,13 +4,7 @@ language: generic
 install:
   # We do this conditionally because it saves us some downloading if the
   # version is the same.
-  - wget https://repo.continuum.io/miniconda/Miniconda3-4.5.12-Linux-x86_64.sh -O miniconda.sh;
-  - bash miniconda.sh -b -p $HOME/miniconda
-  - source "$HOME/miniconda/etc/profile.d/conda.sh"
-  - hash -r
-  - conda config --set always_yes yes --set changeps1 no
-  # Useful for debugging any issues with conda
-  - conda info -a
+  - source setup/setup_conda.sh
 services:
   - mongodb
 script:

setup/checks/check_for_conda.sh

@@ -0,0 +1,10 @@
+CURR_CONDA_VER=`conda --version | cut -d " " -f 2`
+EXP_CONDA_VER=4.5.12
+
+if [ $CURR_CONDA_VER == $EXP_CONDA_VER ]; then
+    echo "For conda, found $CURR_CONDA_VER, expected $EXP_CONDA_VER, all is good!"
+else
+    echo "For conda, found $CURR_CONDA_VER, expected $EXP_CONDA_VER, run setup/setup_conda.sh to get the correct version"
+    exit 1
+fi
+

setup/setup.sh

@@ -1,11 +1,12 @@
-
 # If the conda binary is not found, specify the full path to it
 # you can find it by searching for "conda" under the miniconda3 directory
 # typical paths are:
 # - on linux: /home/<user>/miniconda3/bin/conda
 # - on OSX: /Users/<user>/miniconda3/bin/conda
 # - on Windows: C:/Users/<user>/Miniconda3/Scripts/conda
 
+source setup/checks/check_for_conda.sh
+
 echo "Setting up blank environment"
 conda create --name emission python=3.6
 source activate emission

setup/setup_conda.sh

@@ -0,0 +1,9 @@
+EXP_CONDA_VER=4.5.12
+
+wget https://repo.continuum.io/miniconda/Miniconda3-$EXP_CONDA_VER-Linux-x86_64.sh -O miniconda.sh;
+bash miniconda.sh -b -p $HOME/miniconda
+source "$HOME/miniconda/etc/profile.d/conda.sh"
+hash -r
+conda config --set always_yes yes --set changeps1 no
+# Useful for debugging any issues with conda
+conda info -a

setup/setup_nomkl.sh

@@ -5,6 +5,8 @@
 # - on OSX: /Users/<user>/miniconda3/bin/conda
 # - on Windows: C:/Users/<user>/Miniconda3/Scripts/conda
 
+source setup/checks/check_for_conda.sh
+
 echo "Setting up blank environment"
 conda create --name emission python=3.6
 conda activate emission

setup/setup_notebook.sh

@@ -5,6 +5,8 @@
 # - on OSX: /Users/<user>/miniconda3/bin/conda
 # - on Windows: C:/Users/<user>/Miniconda3/Scripts/conda
 
+source setup/checks/check_for_conda.sh
+
 echo "Setting up blank environment"
 conda create --name emission python=3.6
 conda activate emission

setup/setup_tests.sh

@@ -1,5 +1,7 @@
 #!/bin/bash 
 
+source setup/checks/check_for_conda.sh
+
 echo "Setting up blank environment"
 conda create --name emissiontest python=3.6
 if [ ${CI} == "true" ] ; then

setup/teardown_conda.sh

@@ -0,0 +1 @@
+rm -rf $HOME/miniconda