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Merge 19Jan2022 NOAA-EMC/develop branch
Squashed commit of the following:
commit d3028b9d8268028226f9c27800fcd6655e9e4bb8
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Wed Jan 19 14:29:51 2022 -0500
Fix setting of OUTPUT_FILETYPES (#589)
The setting of OUTPUT_FILETYPES was being overwritten by the FV3 model configure parsing script, so the settings determined in the config.fcst file was being ignored. Now that block is removed and config.fcst is updated to make sure it is set for any machine.
Fixes #588
commit 13421b01a07e5d1cca32ee7579a4094d8209b072
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 12:16:29 2022 -0500
Update PR template
commit 322a61a61238e8486cb42d7d26282b2728d0c32f
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 12:13:33 2022 -0500
Move PR template MD file. Update issue templates
commit 7a52fc8d8bbfc5896b7d03004d5189b2a6b24013
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 11:32:51 2022 -0500
rename pull_request_template.md
commit 88ec66eb834e9a78c94feae4f37f774c7807aa3c
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 10:34:54 2022 -0500
make changes to the templates
commit 66d84e21ad7ae3fafb4ad5097faf86dfa1b99b60
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Jan 19 10:08:45 2022 -0500
Fix lfrac entry in diag table (#570)
Land fraction was listed in the wrong module, keeping it from being
written to output.
Refs: #562
commit e2657adbdadaac7089591390428324c6aec260a9
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 17:04:04 2022 -0500
Update NCO_bug_report.md
commit a9d6851a0c3b6051cb1c7c7ec482fc50d762bef4
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 16:59:18 2022 -0500
Update bug report issue template
commit 2fab8b4213645b79b3fea8127e7d4ab21044188e
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 15:13:53 2022 -0500
Add templates for Github (#560)
Adds GitHub templates for new issues and PRs to standardize and make sure all the needed information is included.
commit 03be05309b184421c473f1b43082b766b114fd46
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Jan 18 10:02:02 2022 -0500
Fix toggle for building workflow_utils (#580)
The fv3gfs_build.cfg did not have a space between the periods and
the setting for workflow_utils, which means the setting was ignored
and the default of yes was always used.
Fixes: #577
commit aadd3bae3d4fdc7827a93ab51b336a7f6b2fdb02
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Jan 18 10:01:24 2022 -0500
Remove redundant toggle for gldas build (#579)
The build cfg files controlling which components are built and the
partial_build.sh script all have two instances trying to set the
value for gldas. This means one of the settings did nothing when
changed.
Fixes: #578
commit 86d4b305a070c080dcfd44a3f9a31ca2280759fa
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Fri Jan 14 01:05:59 2022 -0500
Update config missed in last GSI update (#569)
When the GSI version was updated in PR #530, updates to the config.anal file were mistakenly omitted. That file is now updated following ops (PR #451, #489).
Refs: PR #530
commit 33308ea3b477db17a5db455a4c4887e3d5cbc711
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date: Thu Jan 6 00:44:43 2022 -0500
Updates for P8a (#538)
Updates ufs-weather-model to the 2021 Dec 23 commit and the matching UPP hash. Coupled settings are updated to run the P8a mini prototype.
Updates include:
Turn on ice-albedo feedback in atm (Requires changing input.nml to set use_cice_alb=true in &gfs_physics_nml )
Updates to CA namelists
Updates for NOAH-MP which require input.nml update for to export iopt_sfc="3" and modifying parm_fv3diag to include pahi, pah_ave, ecan_acc, etran_acc,edir_acc,wa_acc, lfrac to the grib outputs "gfs_phys", "pahi", "pahi", "fv3_history2d", "all", .false., "none", 2
Closes #525
commit ae7092405e7552f76674b33fc81cb3973a68ad4e
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Mon Jan 3 17:28:47 2022 -0500
Reordered CDUMP_LIST Refs #541 (#542)
commit 033b1d8ef29b7c829e8131758135b372ae61de26
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Sun Dec 19 22:18:48 2021 -0500
Update GSI version to 2021 Dec 14 (#530)
commit b187e2aa15bfd7600c49627fd4c2d02915b50abe
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Dec 16 22:15:45 2021 -0500
Replace all backticks for command substitution (#526)
All instances where backticks are used for command substitution are
replaced with $( ). This standardizes usage around $( ), which can
be nested and does not be confused with single quotation marks.
Refs: #397
commit dd03ed0953bfc65f5a9c85529dd2c95ac0625189
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Fri Dec 10 15:35:00 2021 -0500
Add coupled support and update UFS (#500)
Adds support for full coupled model except aerosols (FV3-WW3-MOM6-CICE) following the prototype settings. Support for aerosols will be added soon.
This also updates the UFS version to develop as of Oct 7. There are associated additions or changes to settings, but we've tried to have defaults maintain the same behavior as previously.
Issues related to memory in prep and ocnpost on Hera and Orion due to changes in the slurm configuration have been addressed.
Due to a change in the dycore that uses the checksum in the NetCDF files to check for data integrity, warm start ICs may need an additional offline step before use to update the checksum:
```
ncatted -a checksum,,d,, ${RESTARTinp}/${PDY}.${cyc}0000.fv_core.res.tile1.nc ./fv_core.res.tile1.nc
ncatted -a checksum,,d,, ${RESTARTinp}/${PDY}.${cyc}0000.fv_tracer.res.tile1.nc ./fv_tracer.res.tile1.nc
```
A new setting APP controls what components (and their respective jobs) are turned on. The setting can be found in config.base, but can be set at experiment setup time using the new --app option. Recognized values are ATM (atm-only), ATMW (atm and waves), S2S (atm-ocn-ice), S2SW (atm-ocn-ice-wav). If no value is given, the default is ATM, so there is no change in behavior if you omit the option. For now, these values follow their UFS equivalents, but they may diverge in the future based on the needs of global workflow. ATMW is known to not quite work; S2S is so far untested.
When run using the S2SW app, the workflow will automatically substitute the coupled IC copying job in place of the normal gfsprep jobs and use roughly the settings from prototype 7.2 (except aerosols). The alternate settings for the coupled configuration (compared to ATM) are taken from the config.defaults.s2sw file.
Coupled prototype ICs are currently being maintained on Hera, Orion, and WCOSS-Dell. The locations are set in the config.coupled_ic. There is a base location (BASE_CPLIC) and a setting for each component specifying a subdirectory within the base location.
There are new options available for the checkout.sh, build_all, and link_fv3 scripts:
- checkout.sh has a new -m option that allows you to override the UFS hash that is checked out.
- build_all.sh has two new options: -c to build UFS as the coupled model, and -a to build UFS as ATM-GOCART (but aerosols are not fully supported yet). These options are then passed to build_ufs.sh. The options are temporary, as all configurations will be available from a single executable soon. When building for coupled, the subcomponents built is controlled by cpl_build.cfg.
- link_fv3.sh is renamed to link_workflow.sh and adds an optional third argument, "coupled". When provided, the files necessary for coupled are linked. This option is also temporary, as the link script will be updated to always link these files.
### To run in coupled mode with prototype settings/inputs
1. Clone as usual
2. Run checkout.sh
3. Run build_all.sh with the -c option `./build_all.sh -c` (the -c option is temporary)
4. Run link using the coupled argument: `./link_workflow.sh emc <machine> coupled`
5. Run setup_expt_fcstonly.py using the --app option S2SW
6. Modify config files as necessary. config.defaults.s2sw will automatically override some settings when app is S2SW
7. Run setup_workflow_fcstonly.py as usual
8. Setup rocoto to run your experiment
### Technical udpates
Converts global forecast into a set of modular scripts. The scripts define a bunch of functions to be called, with separate functions for each component in each classification. For instance, there is an FV3_GFS_predet, MOM6_predet, CICE_predet, etc. that are conditionally run if the associated component is on.
The diag table for AOD 550 (diag_table_aod) is reduced to just the portion needed in addition to the normal diag table so it can be appended. Ideally, in the future, we extend this treatment so diag tables can be built based on settings instead of having separate ones for each combination.
Wave input file templates that were formerly kept in the fix directory are now more appropriately moved inside the global-workflow in parm.
The group labels for the post jobs now indicates the forecast hours included instead of just an index. This required minor updates to check for 'anl' instead of 0 for analysis jobs.
The checkout script now writes its logs to the logs/ directory the same way as build does, instead of leaving them in sorc/
The UFS model source has been moved to a ufs_model.fd directory, and the build script has been renamed build_ufs.sh.
Error checking was added to the build_ww3prepost.sh script.
The archive script has been streamlined and the section that saves gaussian grid files was fixed, but turned off by default (see PR #517).
rocoto_viewer has been updated to python3 and the dependency on prod_utils was removed, which makes the script more portable. Be sure to load a sufficient version of python to use.
For those coming from coupled-crow: ice and ocean output files are now linked to COM from the forecast run directory instead of being copied at the end of the forecast. This allows post to run as files are produced instead of after the forecast is complete. Ocean post jobs are handled the same as atmosphere post: forecast hours are grouped into a number of tasks determined by NPOSTGRP in config.ocnpost. The ocean and ice output are now also located in their own component directories in COM (the joint ocean-ice files are located in the ocean directory for now). The atmosphere latitudes are reversed from coupled-crow (see c59260b0).
Co-authored-by: jikuang <jikuang@umd.edu>
Co-authored-by: Kate.Friedman <Kate.Friedman@noaa.gov>
Co-authored-by: Rahul Mahajan <aerorahul@users.noreply.github.com>
Co-authored-by: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov>
Co-authored-by: JianKuang-UMD <51758200+JianKuang-UMD@users.noreply.github.com>
Co-authored-by: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
commit 8abe1dfa8d613f9398cd86564046b53235f62749
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Wed Dec 8 16:36:52 2021 -0500
Fix resource assignment issue found in analysis job running global_cycle (#467)
Correct settings for nth_anal on WCOSS-Dell and nth_cycle everywhere.
commit fdffeaaf013f638ac43ad421981e48fabf7a7070
Author: malloryprow <mallory.row@noaa.gov>
Date: Thu Nov 18 14:17:02 2021 -0500
Update gfsmetp, gfsarch dependencies (related update of EMC_verif-global tag) (#508)
* Update gfsmetp and gfsarch dependencies
* Update EMC_verif-global tag to verif_global_v2.8.0
Refs: #437, #472
commit 108abc589b746b2ba585d18a6b6587e5a0d89f39
Merge: f6f1bb70 e5cd6369
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Nov 16 10:11:39 2021 -0500
Merge pull request #497 from NOAA-EMC/feature/shebang
Update ush/ script files with "python3" in shebang
commit e5cd636930b0e36ae9b2b25697cda317a2df996d
Author: jikuang <jikuang@umd.edu>
Date: Fri Nov 12 11:50:53 2021 -0600
update the following files with "python3" in shebang
commit f6f1bb7026bcb4983b0f9e921a6332b6722fe724
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Wed Nov 10 10:08:42 2021 -0500
Add flag to launcher command to prepend task number to lines in stdout/err (#493)
Modified env file settings for launcher variable to prepend task number label with "-l" flag.
commit 096fc1fb76ee01aff7908b91adc9851da9235cad
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Nov 9 08:47:22 2021 -0500
Update NSSTBUFR file logic in prep job (#469)
Add switch in config.prep to toggle NSSTBUFR file creation in prep.sh. Add logic in prep.sh to copy NSSTBUFR from DMPDIR if not creating as part of the workflow. NSSTBUFR is created with different DTYPS_nsst before 2020102200.
commit 84194a735b46c907656fe2b2cca3ca97799396f0
Merge: a39cb11e 0740b5b6
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Oct 27 11:52:55 2021 -0400
Merge pull request #474 from NOAA-EMC/feature/setx2
Hide module load commands
commit 0740b5b6c622d64b770c73aa47d9789494d94a99
Author: jikuang <jikuang@umd.edu>
Date: Tue Oct 26 13:19:07 2021 -0500
wrap module load commands with set +x
commit a39cb11ef9e72b2913d81521d6f9e51da3a8bc22
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Sep 29 09:36:31 2021 -0400
Update EMC_verif-global tag to verif_global_v2.5.2 (#450)
New tag provides the following updates since the verif_global_v2.2.1 tag:
- Added capability to produce a scorecard (no need to use METviewer AWS to produce scorecards)
- Added capability to produce fit-to-obs plots
- Added support for Jet
- Updated DA ensemble plots graphics to support when models ensemble mean and spread output is on different grids
- Hot fix for new METviewer AWS host name
- Hot fix for reorganizing precipitation verification input files
Refs: #438
commit 6f74cacdffe22f67e99aed1ac0e75720dac27c30
Author: JianKuang-UMD <51758200+JianKuang-UMD@users.noreply.github.com>
Date: Tue Sep 28 09:53:16 2021 -0400
Remove firstcyc job (#440)
The need for the firstcyc job has gone away, removing redundant job.
commit 1ca27148d776eedf96636a845feb95881cfaa138
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Sep 9 11:53:11 2021 -0400
Update repository name for EMC_post component to UPP (#441)
- the "EMC_post" repository was renamed to "UPP" on September 6th 2021
- update repository url in checkout script and Externals.cfg
Refs: #433
commit 7233d0c46cc9d24b01bee0ef6be12d775d2523a4
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon Aug 23 11:22:26 2021 -0400
Add rstprod support to Orion (#421)
- Update EMC_verif-global tag to verif_global_v2.2.1
- Turn on rstprod support by default on Orion
- Change default DMPDIR path on Orion to new rstprod-supported GDA
Refs: #347
commit 20c331dd9678834b980ccc932b6235a8266d4a88
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Aug 19 13:01:07 2021 -0400
Update obsproc package versions for TAC2BUFR implementation (#423)
Update obsproc package versions for TAC2BUFR implementation:
- obsproc_prep v5.5.0
- obsproc_global v3.4.2
- new packages installed on WCOSS-Dell, Hera, Jet, Orion
Refs: #341
commit 7f0f7400520b031e2428238a9741d4d8bfb8207a
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Aug 18 12:41:09 2021 -0400
Update vrfy/metp jobs to use jobid in their DATAROOT folders (#414)
Update vrfy/metp jobs to use jobid in their respective DATAROOT folder names; fixes race condition between vrfy and metp jobs
Refs: #401
commit 9233d965cd19a94ee649b4ee8c117bb587b78923
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Aug 17 12:48:12 2021 -0400
Update workflow_utils build modules and remove ncio module hack (#412)
Add ncio/1.0.0 module load to workflow_utils and remove hack that builds this library inline.
Refs: #407
commit df26e953792913669698ba64b414b3be5184f43d
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Aug 17 11:15:38 2021 -0400
UFS_UTILS tag update - gdas_init support on Jet and HPSS path update for GFSv16 real-time parallel (#410)
* Update UFS_UTILS tag to ufs_utils_1_6_0
* Update HPSS path for real-time GFSv16 pre-implementation parallels
Refs: #400
commit 34427f560c729ee3b7cc91ff357b3ad908a7486a
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Mon Aug 9 15:47:27 2021 -0400
Free-forecast mode support on Jet (#394)
Support for free-forecast mode on Jet is added. Setup support for multiple partitions included (xjet, kjet, sjet, vjet) but tested/recommend to use xjet (default). Verification pieces and cycled mode not yet supported.
commit 8c777ad04bce0555bed9f6666b808515b0a3766d
Merge: ce66c74b fc48af56
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Jul 20 15:53:45 2021 -0400
Merge pull request #370 from BrianCurtis-NOAA/feature/rocoto-py3
Convert setup scripts to python3
commit fc48af56d3a0ccbd3e142d22452b9b5e34173b7b
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 20:48:05 2021 +0000
Missed a set of raw_input(), in py3 they are just input()
commit 44dc907a2ea3b8a29334b2416183ca8775ff4c82
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 19:59:54 2021 +0000
revert rocoto_viewer as its being worked on elsewhere
commit 37f25384c29f6697be5c851868ce98d8b6c31207
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 19:27:32 2021 +0000
Fixes from testing
commit c0716f41f2446fec9a441b285d9033f73345c5d4
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 10:28:06 2021 -0400
Merge w/upstream and update those changes to py3
commit cf8758f84418c236fb45913912491a1c27b2829f
Merge: f9013dec ce66c74b
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 09:21:25 2021 -0400
fix merge conflict in workflow_fcstonly
commit ce66c74bbc43e997bae66a2c2035f2412d3f602b
Merge: 96347ea5 7a166da9
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jul 14 16:18:55 2021 -0400
Merge pull request #362 from KateFriedman-NOAA/bugfix/ffhighres
Correct wrong settings for high-res warm-start free-forecast
commit 7a166da9f20a59729be39fff953bfe367987f046
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jul 14 19:19:45 2021 +0000
Reduce C768 npe_wav_gfs from ops 440 to dev 140
Refs: #353
commit b34c581c3b19ecdcdb4eff463e855597e5c08d80
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jul 14 19:15:31 2021 +0000
Adjust how EXP_WARM_START is set from setup_expt_fcstonly.py step
- remove default value for start (EXP_WARM_START)
- if user provides start flag then use it for EXP_WARM_START
- if user doesn't provide start flag then make a decision for them based on resolution
- if start=None and res=768 then start=warm
- if start=None and res!=768 then start=cold
Refs: #353
commit 69cf53412a61e7fe0fb49e8c688bc2cbb4ded572
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Jun 24 16:38:25 2021 +0000
Set EXP_WARM_START=true in config.base via setup_expt_fcsonly.py if resolution is C768
- have free-forecast setup_expt script check if resolution is operational resolution (C768)
and if so, set EXP_WARM_START=.true.
- forcing EXP_WARM_START=.true. when C768 covers most C768 scenarios regarding cold vs warm starting
- the --start argument still works but new check will override if res=768
- users can still change config.base setting as needed for special scenarios
Refs: #353
commit 08f62e45319c9772ef33cdb3c7aa3ec165fede09
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 21:21:51 2021 +0000
Revert EXP_WARM_START if-block addition in config.getic
- need to determine better way to set EXP_WARM_START
Refs: #353
commit 1c03067ca570295b65f967467ef2329fb7999578
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:33:18 2021 +0000
Revert config.base EXP_WARM_START check change
Refs: #353
commit 0f1cea6662695cad9ecf7df8317a36e1ab5c57e1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:12:27 2021 +0000
Add checks for EXP_WARM_START in config.base and config.getic
- add OPS_RES variable to both config.base.emc.dyn and config.getic
- add if-block in both configs to force EXP_WARM_START=true if CASE=OPS_RES and gfs_ver=v16 (current ops)
- check in config.base helps with later IAU checks
- help catch when user doesn't set EXP_WARM_START=true when running v16 C768
Refs: #353
commit 7ed96c34f3dd6e4c4251e87d9abf62a0dbb413a2
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:10:17 2021 +0000
Add cd to ROTDIR when pulling ops warm starts
- pull v16 warm starts directly into ROTDIR; don't need temporary location to handle subfolder diffs
- resolves issue with GDATE gdas restart files being left in EXTRACT_DIR
Refs: #353
commit 06c5e3cb7bd9d82d4e51a63168465118a34e5882
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:06:42 2021 +0000
Reduce C768 resource settings to fit node limits
- default C768 resources on Hera were 218 nodes which is higher than the 210 node limit per job
- bring C768 settings in config.fv3 down to 148 nodes (on Hera)
- tested new settings in free-forecast mode on Hera
Refs: #353
commit 96347ea527f7b0ab61a1aae6576e2709fb387c7c
Merge: cfca8bb2 5c042e08
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jun 23 11:13:06 2021 -0400
Merge pull request #316 from NOAA-EMC/feature/hpc-stack
GFS components update for hpc-stack support
commit 5c042e087c02cb82fe24ce666e477791f5e2417e
Merge: b36414e4 cfca8bb2
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 17 19:33:03 2021 +0000
Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
commit cfca8bb2ca0dc0105b905c536f346002408db771
Merge: e08f5558 fba8cef5
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Jun 17 14:40:18 2021 -0400
Merge pull request #342 from KateFriedman-NOAA/issue178
Free-forecast integration with chgres_cube and resolve know mode bugs
commit fba8cef5b870d46df1c665d3e9cabb23904ad3cf
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 16 13:57:14 2021 +0000
Remove wave restart pull in getic script
Refs: #178
commit 921838feb9f6fd3fc3c69579c677ffdd7175a103
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 16 13:18:35 2021 +0000
Remove old compile command from build_fv3.sh
Refs: #178
commit b36414e4ce49579c5db1829fab46e1a4ef302569
Merge: 9cf615d1 e08f5558
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 15 18:36:55 2021 +0000
Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
Refs: #164
commit 65ff48e049a651e74be8be121163c20957bf1c44
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:37:24 2021 +0000
Add v16 pgb anl pull to getic script
Refs: #178
commit 37e7c2e0806678c93a11bae682f48da172940fd6
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:36:59 2021 +0000
Add OPS_RES variable to init script
Refs: #178
commit db18627960d2def7bbfee30994f4be6586babe1c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:36:10 2021 +0000
Increase init job walltime to 30 mins from 15 mins
Refs: #178
commit 30aefb11dd8130f1d4a1e6eb951e1fa400fdc361
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 15:43:27 2021 +0000
Update/fix pull of v14/v15 pgrb2 anl files in getic job
Refs: #178
commit 18970c716d79922fa02b86165996bb47fb42d3fa
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 9 12:04:01 2021 -0500
Disconnect archive job in workflow from HPSS access check
- remove dependency on HPSS access to check for adding gdas[gfs]arch job to workflow
- add HPSSARCH variable to ARCHIVE_TO_HPSS definition in cycled workflow, similar to prior addition to free-forecast script
Refs: #178
commit b52d2f0b82e0e376905c64daa593362396f8da1b
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 8 13:06:30 2021 -0500
Update UFS_UTILS checkout to ufs_utils_1_4_0 tag
- new ufs_utils_1_4_0 tag includes updates to support this branch
- From tag release notes:
- Update the GDAS initialization utility to ingest GFS v16 data.
- Update to process either the GFS or GDAS CDUMPs.
Refs: #178
commit 4c858c0f059abd0ff4c937c7bab692d7b13a8163
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 8 13:05:08 2021 -0500
Adjust comments in getic job script
Refs: #178
commit 898a43fb74005e969ecb5baf28ecf2d51f7c5dda
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 8 15:57:32 2021 +0000
Adjust getic/init job scripts
- adjust EXTRACT_DIR, DATA, and ROTDIR usage in getic and init jobs
- remove duplicate pgb file pull from init job
Refs: #178
commit 1cdc2a44c6d29cfb8f06a50238ea29d28642c1f1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 8 15:56:46 2021 +0000
Add cmake module load to Hera block in machine-setup.sh
Refs: #178
commit fe448ff29aedca6a40a748ee47ae001b1639188c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 19:32:15 2021 +0000
Set DO_WAVE to NO
- turning off waves by default in config.base
Refs: #178
commit bfb0a33305a46d87f62c4a5c8bd7799a60362678
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 13:13:08 2021 -0500
Remove RUN_CCPP option, force CCPP now
- remove RUN_CCPP case option from build_all.sh
- remove RUN_CCPP option in build_fv3.sh, force CCPP build now
- remove pre-CCPP GFS ops tag checkout option in checkout.sh, forcing CCPP hash checkout now
Refs: #178
commit 771782f109de15f9f0214bcceb852b51bb4b0e02
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 13:09:42 2021 -0500
Replace Orion checks with hpssarch checks for getic job
- add hpssarch variable to setup_workflow_fcstonly.py
- replace Orion checks with hpssarch=YES checks
Refs: #178
commit e2ac5872ca482eb335bc6294e00594dc3a806718
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 14:23:35 2021 +0000
Update WCOSS-Dell section of machine-setup.sh
- needed cmake module loaded for building
- added cmake module load and prereq stack loads
Refs: #178
commit f0afb91bae738413539ee2f1fdc63b79e93b3e52
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 14:22:43 2021 +0000
Change BDATE to GDATE in getic.sh
Refs: #178
commit 69ac287062512b929a5193ebc86e4c7fcbbb1917
Merge: e62cefb3 e08f5558
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 10:17:52 2021 -0400
Merge branch 'NOAA-EMC:develop' into issue178
commit e62cefb3943a87a90fd40234f08845534df818a1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 16:50:28 2021 +0000
Correct gdas operational tarball name in getic job script
Refs: #178
commit 127723adfde2b7b7c79bd4d346cafcb1f265dc1c
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 16:44:37 2021 +0000
getic job updates to add OPS_RES variable and pull from operational tarballs for warm starting
- add OPS_RES variable to define current operational resolution; use variable where needed now
- updated getic job script to use OPS_RES variable in if-block check
- updated getic job script with new operational tarballs to pull for warm starting high res runs
Refs: #178
commit 499f217f92b5bb0fad9e71de221937d9973046ce
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 15:49:41 2021 +0000
Resolve bug in wavepostpnt jobs when DOBLL_WAV=NO
- change DOBNDPNT_WAV=YES and CFP_MP=YES if-block to only prepare cmdtarfile for CFP
when DOBLL_WAV=YES to avoid scenario where only a single command is added to cmdtarfile
Refs: #178
commit e08f5558372d43d88890ca639e70ab923071361b
Merge: e09a398f b2879fe9
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 26 12:27:40 2021 -0400
Merge pull request #327 from NOAA-EMC/operations
Operations updates for GFSv16.1.1
commit 824ff7254fba04a0b3726316d300f9fa6282c937
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue May 25 20:42:25 2021 +0000
Change UFS_UTILS version to feature branch for testing
Refs: #178
commit 151e0b56b6e38f40449c9eb0807ffa92b6aa46f9
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue May 25 20:41:32 2021 +0000
Correct if-statement syntax in config.init
Refs: #178
commit 005d33d7b100b279e0db5290824c3e7acabfa4ba
Merge: 5ec376ba e09a398f
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 24 15:23:05 2021 -0400
Merge branch 'NOAA-EMC:develop' into issue178
commit e09a398f1cedc7252219e75bf0b319d2601bc8df
Merge: e3fcfebc 6bad810b
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Fri May 21 09:58:49 2021 -0400
Merge pull request #317 from malloryprow/feature/EMC_verif-global_upgrade
EMC_verif-global v2.0.0 major release updates
commit 6bad810bccdfc893fd51b8b55c60c1f732547c3a
Author: Mallory Row <mallory.row@noaa.gov>
Date: Fri May 21 13:55:13 2021 +0000
Update Externals.cfg EMC_verif-global tag to verif_global_v2.0.2
Refs: #315
commit 9cf615d11b096ea4843f4e5938a6a65f3500df49
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu May 20 20:10:18 2021 +0000
Modulefile updates for testing with waves on
- updated ww3 and base modulefiles to add modules and update some
- added new: pio/2.5.2i, fms/2020.04.03
- updated esmf module to esmf/8_1_1 and nceppost/dceca26 to upp/10.0.6
Refs: #164
commit b155ff37040658703168268d4e58fe4e6b45a50d
Author: Mallory Row <mallory.row@noaa.gov>
Date: Thu May 20 15:00:04 2021 +0000
Update EMC_verif-global tag to verif_global_v2.0.2
Refs: #315
commit cae62e3f47e245e70fcf3721fb4c022ea11c059f
Merge: 8def77af e3fcfebc
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 19 19:45:05 2021 +0000
Sync merge with develop and WW3 build updates
- Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
- WW3 build updates: revert back to separate module files for build;
address modulefile reorganization in separate issue
- remove CCPP option with system build, doing CCPP by default now
Refs: #164
commit 5ec376bababd935e4f3b15c4754105f5bd750657
Merge: 6b6b9ed3 e3fcfebc
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed May 19 18:24:31 2021 +0000
Merge remote-tracking branch 'origin/develop' into issue178
* origin/develop:
change fv3gfs checkout head
fixed a compilation error, NEMs/exe existing, in hera
build_fv3.sh with ATM
fixed line 43 of link_fv3gfs.sh, build_fv3.sh v15 to v16
bugfix for not removing last point from list in wave post pnt jobs
changes added in link_fv3gfs for fix_aer
changed fix dir for link_fv3gfs
changes on build_fv3.sh and symlinks to optical data files instead of cp
Update util_shared module version to 1.3.0 for wave footer fix
Revert addition of ecflow trigger for wavepostbndpntbll job
update ufs-weather-model tag to GFS.v16.0.16
add ecflow updates for new wave bndpntbll job
Additional WAFS tag update to gfs_wafs.v6.0.21 for GFSv16.0.8
Back out updates to add config.resources.nco.static
WAFS tag update to gfs_wafs.v6.0.20 in Externals.cfg
WAFS tag update (gfs_wafs.v6.0.20) for v16 post-implementation fixes
fix for missing wave boundary cbull and bull files
Fix cycle date in bull and cbull wave files
Reverting transfer parm file changes committed at 39bab45
Component tag updates for nwprod/gfsv16.0.7
Updated transfer parm files for gdas, enkf, and gfs dissemination
updated config.fcst
testing merra2 workflow in hera
update merra2 before a new pull request
Issue #215 - GFSv15.3.5 ops updates for gempak and bufrlib versions
udate config.base.emc.dyn
high resolution MERRA2 data used
fixed a bug related to orion
added merra2 input and update diag_table
merra2 workflow for orion
Clean up commments
Updated sorc/checkout.sh to pick gfsda.v15.3.3 ( EUM bufr changes )
commit 4641c5d206a95e0e66276fa86d46ecd580213fd5
Merge: eff8a125 e3fcfebc
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed May 19 14:51:19 2021 +0000
Merge branch 'develop' into feature/EMC_verif-global_upgrade
commit e3fcfebc1ff9c9f9ceda7b775de0c34117de6459
Merge: 95e0dffe fa5d1e2b
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 19 10:02:19 2021 -0400
Merge pull request #254 from AnningCheng-NOAA/merra2
Addition of support for MERRA2
commit fa5d1e2ba242a08e26cb7bac8c68b700a83d1d60
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Tue May 18 10:41:16 2021 -0400
change fv3gfs checkout head
commit 283c4a044847bbadd0cef46e14dde4de97abe986
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Mon May 17 15:56:56 2021 -0400
fixed a compilation error, NEMs/exe existing, in hera
commit 6b574160f94329754677e7f4541ab07c44185bb0
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Fri May 14 13:44:18 2021 +0000
build_fv3.sh with ATM
commit dfc8aa9a2cf5370fff38520d2a28f3960be3b583
Merge: bf5d1106 95e0dffe
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Wed May 12 20:11:44 2021 +0000
Merge remote-tracking branch 'upstream/develop' into merra2
commit eff8a1258aa70c061fe69697388f8914935726ee
Merge: b1ad0b96 95e0dffe
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed May 12 19:15:17 2021 +0000
Merge branch 'develop' into feature/EMC_verif-global_upgrade
commit 95e0dffea435af17be9150fcd0c842763768b45f
Merge: fc727f40 dd4d1879
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 12 14:51:10 2021 -0400
Merge pull request #323 from NOAA-EMC/sync/operations_v16.0.9
Bring operations branch v16.0.9 changes into develop
commit dd4d1879093516a7950c9e0e59f6e44e462199f6
Merge: fc727f40 68b9157b
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon May 10 16:40:13 2021 +0000
Merge remote-tracking branch 'origin/operations' into sync/operations_v16.0.9
* origin/operations:
bugfix for not removing last point from list in wave post pnt jobs
Update util_shared module version to 1.3.0 for wave footer fix
Revert addition of ecflow trigger for wavepostbndpntbll job
update ufs-weather-model tag to GFS.v16.0.16
add ecflow updates for new wave bndpntbll job
Additional WAFS tag update to gfs_wafs.v6.0.21 for GFSv16.0.8
Back out updates to add config.resources.nco.static
WAFS tag update to gfs_wafs.v6.0.20 in Externals.cfg
WAFS tag update (gfs_wafs.v6.0.20) for v16 post-implementation fixes
fix for missing wave boundary cbull and bull files
Fix cycle date in bull and cbull wave files
Reverting transfer parm file changes committed at 39bab45
Component tag updates for nwprod/gfsv16.0.7
Updated transfer parm files for gdas, enkf, and gfs dissemination
Issue #215 - GFSv15.3.5 ops updates for gempak and bufrlib versions
Clean up commments
Updated sorc/checkout.sh to pick gfsda.v15.3.3 ( EUM bufr changes )
Refs: #309
commit 8def77afd4a9f1cd6cdca42c956bc7ebf675a58d
Merge: c6e2a96e d46e8cf4
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 10 11:45:02 2021 -0400
Merge pull request #322 from JessicaMeixner-NOAA/hpcstackww3
Updates for ww3 pre and post exec builds for hpc-stack
commit d46e8cf49aff0dbf72e457f1177e10e6f50252a6
Author: Jessica Meixner <Jessica.Meixner@noaa.gov>
Date: Mon May 10 15:31:56 2021 +0000
update for ww3_pre/post build:
-- remove ww3 specific module files
-- updated module base files to be in sync with ufs-weather-model
except that jasper is a more recent version which is needed for ww3_grib
-- added extra ww3 execs needed for this branch
-- added ww3prepost build to build_all and partial build
commit c6e2a96e86611cce00455609d9be803d580e7bc0
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon May 10 14:30:13 2021 +0000
Change fix file linking to scan for possible subfolders in set
- instead of providing subfolder names, scan for subfolders in FIX_DIR path
and then create symlinks based on existing subfolders in set
- will not have to keep updating list of subfolders now
Refs: #164
commit aa1d1e9ca1d8521ef22e1bdb654d4a70e7b1e29e
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon May 10 14:27:13 2021 +0000
Change CCPP_SUITE from FV3_GFS_v16beta to FV3_GFS_v16
- newer ufs-weather-model hash supports FV3_GFS_v16 suite
Refs: #164
commit 1aea3ee393c99d4f76556fbbdbebc43f629558c2
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 5 14:30:06 2021 +0000
Add build script and modulefiles for WW3 build
- WW3 execs no longer built by FV3 build, need separate build now
- add new build_ww3prepost.sh script for building WW3 execs in ufs-weather-model checkout
- add modulefiles for WCOSS-Dell, Hera, and Orion
Refs: #164
commit 214431a2c04f6e685e966810621fc2fae771d2f5
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 5 14:26:00 2021 +0000
Update WAFS execs to include .x
- update WAFS exec names in link_fv3gfs.sh to include ".x" extension that was added with new version
Refs: #164
commit eb1613764794a35d165e55423682ed592b2aaacb
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 5 14:22:06 2021 +0000
ufs-weather-model hash update for WW3 support with hpc-stack
- update ufs-weather-model hash to 554aedcd63e4a7c5012570406132eaf76e249ca9
- update build_fv3.sh for new compile arguments for CCPP/WW3 build
Refs: #164
commit b1ad0b96328a54112ecc13ff4b71dcc08556a8c1
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed May 5 14:13:58 2021 +0000
Update EMC_verif-global tag to verif_global_v2.0.1
Refs: #315
commit c206e8d2606f14ee6188740f881673ff512b866b
Author: Mallory Row <mallory.row@noaa.gov>
Date: Mon May 3 19:16:42 2021 +0000
Fix typo in config.metp
There was a typo in the grid-to-obs METviewer related config variables.
The variables started with "g2g1" instead of "g2o1".
Refs: #315
commit f9013decd5af75f66eda619175bacc7549f4746a
Author: Brian Curtis <Brian.Curtis@noaa.gov>
Date: Mon May 3 14:37:13 2021 -0400
Files to test for python3 compatibility
commit 858f216330d7ab71137afe6331f6576fec413aee
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon May 3 15:19:56 2021 +0000
Update EMC_post, UFS_UTILS, EMC_gfs_wafs versions in Externals.cfg
Refs: #164
commit 6ce83363726ece6dbd34719430dd44f5e63bbc3c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon May 3 15:14:54 2021 +0000
Component updates for UPP, WAFS, UFS_UTILS
- new tag in checkout for UFS_UTILS to use hpc/1.1.0
- new hash in checkout for UPP/EMC_post to support GTG and GTG code copy fix
- new hash in checkout for WAFS/EMC_gfs_wafs to support hpc-stack
- build script update for WAFS (cmake/stack)
- WAFS GCIP config update to fix runtime error
Refs: #164
commit 709095709ca60498d05ea0f519b494501e1ecdf2
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon May 3 15:11:51 2021 +0000
Update util_shared to 1.3.0 on WCOSS-Dell
- version changed in production for v16.0.9 footer fix
Refs: #164
commit bf5d110632fc67653441e6830bfdcdddda906706
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Mon May 3 10:53:37 2021 -0400
fixed line 43 of link_fv3gfs.sh, build_fv3.sh v15 to v16
commit fb47a5a0f7391f670461b00eaf324c3b0102ef1f
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Apr 28 17:50:15 2021 +0000
Update TC_tracker version in config.vrfy
- new TC_tracker.v1.1.15.4 was made available by Jiayi Peng
- new version supports hpc-stack on supported platforms
- installed locally on WCOSS-Dells, Hera, and Orion
Refs: #164
commit 587ac0c914430d5b887327d7c566c452d2eace62
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Wed Apr 28 10:36:49 2021 -0400
changes added in link_fv3gfs for fix_aer
commit 48690cd07ceeb90c6808346a04a31a6166505c86
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed Apr 28 14:00:46 2021 +0000
Update EMC_verif-global tag to verif_global_v2.0.0
commit 1d0e0c29979101b451f1fda265af3f9a716bb9de
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Apr 27 19:33:09 2021 +0000
Reverting resource related changes
- will commit resource adjustments separately
Refs: #164
commit 101905ce4d92a544d353700b0acdc137aa61b088
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Tue Apr 27 14:15:59 2021 -0400
changed fix dir for link_fv3gfs
commit 7cd6e0e3000a47b39fa0c7e75ad66150e96385d8
Author: Mallory Row <mallory.row@noaa.gov>
Date: Fri Apr 23 14:44:03 2021 +0000
Fix setting of 'SDATE_GFS' for free forecast XML
In the workflow XML for free forecasts there is no SDATE_GFS
variable. The 'SDATE_GFS' variable was changed to be set to the
value of 'SDATE'.
Refs: #315
commit d34b99d4e3d369b784fd9d2c639a0bddd1bbfc0c
Author: Mallory Row <mallory.row@noaa.gov>
Date: Fri Apr 23 12:59:51 2021 +0000
Clean up and add new settings in metp.sh
SDATE_GFS was added into the script preamble following the
addition of the variable being added as a rocoto exported
environment variable for metp tasks.
Config.vrfy was removed from the list of relevant configs
to source.
Variables CDATEm1 and PDYm1 were removed and replaced with
VDATE. VDATE is the verification date to be done by the metp
tasks based on VRFYBACK_HRS set in config.metp.
Lines were added to catch the exit status of VERIFGLOBAL_SH
and to exit if not succesfully run so it can be caught by
rocoto.
Refs: #315
commit 998f1a454427dedd46bb20b36e381bedbdf3e349
Author: Mallory Row <mallory.row@noaa.gov>
Date: Fri Apr 23 12:49:38 2021 +0000
Revamp of config.metp
Following the EMC_verif-global configuration remake, config.metp
has been revamped to support the new configuration settings.
Refs: #315
commit 6a01ae405202b8984fe8efa73573d7fdba2b74d2
Author: Mallory Row <mallory.row@noaa.gov>
Date: Thu Apr 22 17:17:14 2021 +0000
Add 'SDATE_GFS' rocoto env var for metp tasks
The connector script between EMC_verif-global and global-workflow
run_verif_global_in_global_workflow.sh (housed in EMC_verif-global)
contains a new feature that checks the maximum forecast hour for
verification is the hour's initialization date is equal to or after
the first GFS cycle initialization. If the date is before, the
maximum forecast hour is adjusted to the maximum hour relative to
the forecast verification date and the first GFS cycle initialization.
This feature was added to cut down on METplus calls being done
on data that don't exist.
Refs: #315
commit dfec5816add3c56721360a418ec9f3459cfd4d8c
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Apr 22 15:27:56 2021 +0000
Update UFS_UTILS hash to 9d9dd23e37a51fcc5ff6b7499b834c85ab32e5f3
Refs: #164
commit be564bb85eeefbb1699992e0ed4f0705e4e2ee24
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Thu Apr 22 11:22:02 2021 -0400
changes on build_fv3.sh and symlinks to optical data files instead of cp
commit 15c6619c6e211eb67ca6aa5c995e4a3bf4cf586f
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Apr 22 14:03:46 2021 +0000
Adjust C768 fcst thread value for reduced node usage
- change C768 nth_fv3_gfs value from 7 to 2
Refs: #164
commit ece41632a76e697184a46bb2a428c35ccdf08305
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Apr 22 13:58:22 2021 +0000
Add separate gfs resource variables to fcst in config.resources
Refs: #164
commit 00c18b5e341d601fd83da2f9df2ac928e8dcf7c8
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Apr 22 13:44:13 2021 +0000
Update FIX_DIR paths in link_fv3gfs.sh
- change platform FIX_DIR paths from fix_nco_gfsv16 set to developmental fix set for v17+
Refs: #164
commit b6c392c7569ed909d6b0b27c0f6a4f828b7acdfd
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Apr 22 13:40:25 2021 +0000
Set DO_WAVE=NO in config.base
- set default DO_WAVE setting to NO in config.base.emc.dyn
- turn off waves until hpc-stack for WW3 execs build is ready
Refs: #164
commit 2b703d335b8e3e97c9764bd60d87188ed11938fd
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Apr 22 13:17:28 2021 +0000
Set WAFS checkout to be optional with -o flag
- add checkout_wafs to -o flag settings
Refs: #164
commit 305bf5e0fb3c665cf71f10023feed1a121be329b
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Apr 22 13:01:04 2021 +0000
Update Externals.cfg to match checkout.sh versions
Refs: #164
commit 3cc02d507df48e2b9f99163d737123e5b5c716c0
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Apr 22 12:52:46 2021 +0000
Update GLDAS and UFS_UTILS checkouts
- update GLDAS checkout to gldas_gfsv16_release.v1.15.0 tag; corrects build on Orion
- update UFS_UTILS checkout to 4f44bf89 hash of develop (supports stack)
Refs: #164
commit 9d733f87203ebd2298d22c0ac9491520bae60983
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Apr 22 12:15:13 2021 +0000
Add support for separate gfs thread values
- nth_fv3_gfs was added to configs, add support to setup scripts for resource calculations
Refs: #164
commit 4c64dce093fb3925b40b2a3f0b57fd196b14d92c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Apr 22 12:14:21 2021 +0000
Reduce npe_wav_gfs from 440 to 140 to dev users
Refs: #164
commit 35c16e3aafc3addd3d24225880b5319332cca97a
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Apr 22 12:12:16 2021 +0000
Add wgrib2 module load to module_base.wcoss_dell_p3
- add wgrib2/2.0.8 module load
- add setting of WGRIB2 to equal wgrib2
Refs: #164
commit 6b6b9ed3949c2e3ca3d697ffd3bb3a65ec728744
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon Apr 12 17:13:06 2021 +0000
getic and init job updates for v16 in ops
- update GFSv16 implementation cycle in config if-blocks to be 2021032100
- add note about missing ops data on HPSS for 2021032106 cycle
- add run_v16.chgres.sh as default RUNICSH script
Refs: #178
commit 48ea7abd9fe4cfd0e774c92383948c9bb477a905
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon Apr 12 17:10:59 2021 +0000
Low resolution resource adjustments
- C96, C192, and C384 config.fv3 resource updates for successful jobs
- provided by Jun Wang and Fanglin Yang
- tested on Hera
Refs: #178
commit b55ecf8e5ae761ddc8e3897411aceb4e0529e106
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Apr 6 15:34:05 2021 +0000
Remove Tide/Gyre reference from machine-setup.sh
Refs: #164
commit ab488f1aeb383d84a67b37e47a888d58662cf82f
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Apr 6 15:33:11 2021 +0000
Update OznMonBuild, RadMonBuild and module_base for hpc-stack on WCOSS-Dell
Refs: #164
commit 384440ced59c18af777f7f9bb30016f3e71a1c31
Merge: 2f6d7ab0 fc727f40
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon Mar 22 17:15:27 2021 +0000
Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
* origin/develop:
Add two WAFS sorc folders to .gitignore
Remove unneeded builds from build_all and partial build
Delete unneeded files after workflow utils build was converted to cmake
Remove global_chgres exec symlink from link_fv3gfs.sh
Refs: #164
commit f35e6090bcf097355e691266bbc12ace6591c150
Merge: 5c77500b fc727f40
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon Mar 22 15:48:55 2021 +0000
Merge remote-tracking branch 'upstream/develop' into issue178
* upstream/develop:
Add two WAFS sorc folders to .gitignore
Remove unneeded builds from build_all and partial build
Delete unneeded files after workflow utils build was converted to cmake
Refs: #178
commit 5c77500bc4742a840a26f05aedffe2aca3e15ec7
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon Mar 22 15:44:40 2021 +0000
Add exit in init.sh when C768 v16 warm starts detected
Exit init.sh and init job when high res C768 v16 warm starts are detected
and running chgres_cube is not needed.
Refs: #178
commit fc727f405afd4948ee99be1c13c9f2541405cc8b
Merge: 258b342d 7582541c
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Mar 10 16:40:18 2021 -0500
Merge pull request #288 from NOAA-EMC/feature/issue272
Post-cmake cleanup and decommissioning
commit 7582541c3b4ec182756ad1fa9164c21e0345f058
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Mar 10 20:08:43 2021 +0000
Add two WAFS sorc folders to .gitignore
- two missing WAFS symlinks were added to link_fv3gfs.sh in prior
commit; include them in gitignore file now
Refs: #272
commit 4f7243bc68164faf0008893467c5a2ea53d216ae
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Mar 9 18:07:23 2021 +0000
Remove global_chgres exec from link_fv3gfs.sh; no longer exists from UFS_UTILS
Refs: #178
commit fcd720edef1fe242c27d543f445bb3b4ee4fe9ec
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Mar 9 17:54:51 2021 +0000
Remove unneeded UFS_UTILS symlinks in link_fv3gfs.sh
Refs: #178
commit 2f6d7ab06b3be6eaedb3406efca77ded61ef7aca
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Mar 9 17:41:14 2021 +0000
Module base updates for WCOSS-Dell, Hera, and Orion
- add zlib module load
- reorder wgrib2, hdf5, and netcdf module loads to accommodate module dependencies
Refs: #164
commit 1285d803fd402945ebc03eb42eb8bfa3d2aa10da
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Mar 9 10:59:09 2021 -0600
Update GSI checkout to clone GSI-master @ 9c1fc15
Refs: #164
commit 14736c8320bec43651208950c16ea85ae2372985
Merge: e6a9e576 bea02f8a
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Mar 9 16:56:42 2021 +0000
Merge branch 'feature/hpc-stack' of https://github.com/NOAA-EMC/global-workflow into feature/hpc-stack
* 'feature/hpc-stack' of https://github.com/NOAA-EMC/global-workflow:
Correct if-block syntax in config.postsnd and config.wavepostbndpnt after testing setup scripts
FHMAX_WAV_IBP variable check for wavepostbndpnt job
Bufr sounding job update
Add config.resources.nco.static
ecflow forecast job resource updates from NCO v16.0.7 install
Update EMC_verif-global tag to verif_global_v1.13.5
Add missing symlinks for WAFS source code folders
Update EMC_gfs_wafs tag to gfs_wafs.v6.0.19
Remove KEEPDATA from config.base.nco.static
Pull in config changes from NCO v16.0.7 install
Pull in workflow changes from NCO v16.0.7 install
Update EMC_verif-global tag to verif_global_v1.13.4
ecFlow resource adjustments from NCO for forecast and post jobs
issue #257 shorten run time on Mars Dell1 file system
commit e6a9e576744a1c245148bdc4b967a5674c9416b5
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Mar 9 16:55:41 2021 +0000
Remove UFS_UTILS symlinks no longer needed in link_fv3gfs.sh
Refs: #164
commit 370e81474ce8f4076b0853b37de7da9c65d65c88
Merge: 364e46ff 258b342d
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Mar 9 16:14:40 2021 +0000
Merge remote-tracking branch 'upstream/develop' into issue178
* upstream/develop:
Correct if-block syntax in config.postsnd and config.wavepostbndpnt after testing setup scripts
FHMAX_WAV_IBP variable check for wavepostbndpnt job
Bufr sounding job update
Add config.resources.nco.static
ecflow forecast job resource updates from NCO v16.0.7 install
Update EMC_verif-global tag to verif_global_v1.13.5
Add missing symlinks for WAFS source code folders
Update EMC_gfs_wafs tag to gfs_wafs.v6.0.19
Remove KEEPDATA from config.base.nco.static
Pull in config changes from NCO v16.0.7 install
Pull in workflow changes from NCO v16.0.7 install
remove flags that were not present in Makefiles
update jasper to 2.x.25. remove compiler flag in fv3nc2nemsio
Update EMC_verif-global tag to verif_global_v1.13.4
another use of _d where an _4 is needed
Adjust how target is set for build_workflow_utils
Add workflow_utils to build_all and link scripts
copy/paste error from enkf_chgres_recenter.fd to enkf_chgres_recenter_nc.fd. When going from nemsio to netcdf, the linking of ip, sp and w3nco changed from _d to _4.
update .gitignore to exclude build and install directories as well as compiled files. bugfix in build_workflow_utils.sh hack. nceplibs-ncio now creates the module ncio and not fv3gfs_ncio.
Update EMC_verif-global tag to verif_global_v1.13.4
add cmake build capability for workflow utilities
ecFlow resource adjustments from NCO for forecast and post jobs
issue #257 shorten run time on Mars Dell1 file system
Refs: #178
commit 364e46ff2acabed7bd9f6cb07ca10aa19033a980
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Mar 9 16:08:57 2021 +0000
Add pull of gdas wave restart files in getic.sh if DO_WAVE=YES
Refs: #178
commit bea02f8a6fc496794471e57aa75e030092027bd5
Merge: fd50508f 258b342d
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon Mar 8 14:02:51 2021 -0600
Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
* origin/develop:
Correct if-block syntax in config.postsnd and config.wavepostbndpnt after testing setup scripts
FHMAX_WAV_IBP variable check for wavepostbndpnt job
Bufr sounding job update
Add config.resources.nco.static
ecflow forecast job resource updates from NCO v16.0.7 install
Update EMC_verif-global tag to verif_global_v1.13.5
Add missing symlinks for WAFS source code folders
Update EMC_gfs_wafs tag to gfs_wafs.v6.0.19
Remove KEEPDATA from config.base.nco.static
Pull in config changes from NCO v16.0.7 install
Pull in workflow changes from NCO v16.0.7 install
Update EMC_verif-global tag to verif_global_v1.13.4
ecFlow resource adjustments from NCO for forecast and post jobs
issue #257 shorten run time on Mars Dell1 file system
Refs: #164
commit e9e1f3ba976f053c6738d95d6de673a065d293c1
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon Mar 8 19:54:24 2021 +0000
Remove unneeded builds from build_all and partial build
- remove build sections in build_all.sh that ran builds that are now
consolidated into build_workflow_utils.sh
- remove build options in partial build script and config that are
now consolidated into workflow_utils build
Refs: #272
commit 26fa8c355c241a64d19097da3caa54cba0e46b77
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon Mar 8 19:38:45 2021 +0000
Delete unneeded files after workflow utils build was converted to cmake
- remove modulefiles that are no longer needed; consolidated into new workflow_utils.* modulefiles
- remove build scripts that are no longer needed; consolidated into new build_workflow_utils.sh script
Refs: #272
commit 258b342d5b6535cf87973105d770a63f4245d44a
Merge: f6aa6939 729631d6
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon Mar 8 12:59:46 2021 -0500
Merge pull request #282 from NOAA-EMC/feature/issue238
GFSv16.0.7 changes from NCO
commit 729631d66f72ba8a3929e4927129d000879c9a1b
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon Mar 8 17:40:17 2021 +0000
Correct if-block syntax in config.postsnd and config.wavepostbndpnt after testing setup scripts
Refs: #238
commit a1edf0de4deaccbf7f77f2fb4d24d1ca96c26171
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon Mar 8 17:21:05 2021 +0000
FHMAX_WAV_IBP variable check for wavepostbndpnt job
- add variable override in exgfs_wave_post_bndpnt.sh for FHMAX_WAV_IBP
- add check to config.wavepostbndpnt for when FHMAX_GFS is less than FHMAX_WAV_IBP;
set FHMAX_WAV_IBP to equal FHMAX_GFS when shorter gfs forecast than 180hrs; resolves
runtime error with wavepostbndpnt job waiting for forecast output that will never arrive
Refs: #238
commit ac76613f33f7d196a1d04972bc7c975d579da571
Merge: 0f97ccda f6aa6939
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Mon Mar 8 10:09:47 2021 -0600
Merge remote-tracking branch 'upstream/develop' into merra2
* upstream/develop:
remove flags that were not present in Makefiles
update jasper to 2.x.25. remove compiler flag in fv3nc2nemsio
Update EMC_verif-global tag to verif_global_v1.13.4
another use of _d where an _4 is needed
Adjust how target is set for build_workflow_utils
Add workflow_utils to build_all and link scripts
copy/paste error from enkf_chgres_recenter.fd to enkf_chgres_recenter_nc.fd. When going from nemsio to netcdf, the linking of ip, sp and w3nco changed from _d to _4.
update .gitignore to exclude build and install directories as well as compiled files. bugfix in build_workflow_utils.sh hack. nceplibs-ncio now creates the module ncio and not fv3gfs_ncio.
add cmake build capability for workflow utilities
Update Fit2Obs tag to newm.1.3 for bugfix
Update Fit2Obs tag to newm.1.3 for bugfix
Update EMC_verif-global tag for Hera bug
Pull in nwpara/gfsv16.0.6 updates for parse-storm-type.pl
HOTFIX: Update EMC_verif-global tag for Hera bug
Issue #1 and issue #238 - update Externals.cfg to match checkout.sh updates for v16.0.6
move errchk definition from script to job for wave prdgen and gempak
adding definition of errchk which was undefined in these scripts
Issue #179 and issue #243 - update Fit2Obs to newm.1.2 tag and correct COMROOT path for Hera
HOTFIX: Issue #241 - update EMC_verif-global tag to remove use of /tmp space
Issue #1 and issue #233 - update GLDAS tag to gldas_gfsv16_release.v1.13.0
Issue #1 and issue #241 - update EMC_verif-global tag
Issue #1 and issue #238 - remove ak_10m grid from config.wave and update checkout.sh tags for ufs-weather-model and EMC_gfs_wafs
Issue #179 - update to config.vrfy for Fit2Obs tag which supports Orion
Issue #1 and issue #226 - update UPP tag to upp_gfsv16_release.v1.1.3 in Externals.cfg
Issue #1 and issue #226 - update UPP tag to upp_gfsv16_release.v1.1.3
Issue #233 - remove unnecessary extra space in tag line for gldas
Issue #233 - update GLDAS tag to gldas_gfsv16_release.v1.13.0
Issue #1 and issue #226 - update exgfs_atmos_grib2_special_npoess.sh for dbn_alert
modified: exglobal_forecast.sh The breakpoint restart only works for the first restart from a breakpoint. Restart files written in RERUN_RESTRAT after the first restart has a 3-hour time shift for DO_IAU=YES cases. Forecasts starting from the 2nd breakpoint and beyond will fail becasue of incorrect initial conditins. This commit fixes this bug.
issue #227 reducing output bufr files to 64 levels per NCO request
issue #227 reducing output bufr files to 64 levels per NCO request
Issue #1: update ecflow to be consistent with NCO's gfs.v16.0.4 and update checkout to bring in new UPP tag (see issue #226)
Upaded ush script scale_dec.sh
Updated scripts gfs_v16.0
Issue #1 and issue #220 - set C192/C96/C48 npe_eobs back to dev values for develop
Issue #1 - add grib_util module load to several analysis ecflow scripts
Issue #189 - update ufs-weather-model hash
Issue #201 - workaround for failing post000 job before hpc-stack solution
Issue #1 - update WAFS tag to gfs_wafs.v6.0.17 for dbn_alert change
Issue #1 - correct gridded wave parm files for v16.0.3
Issue #1 - changes from NCO for GFSv16.0.3
Issue #1 - update Externals.cfg with final tags for GFSv16.0.2
Fixes for issue #202 (FINDDATE) and issue #208 (postsnd.sh permissions)
Issue #1 - correct permissions on jobs/rocoto/postsnd.sh
Issue #1 - update gempak version to 7.3.3 in the ecflow gfs.ver file
Issue #1 - update gempak and dumpjb versions to 7.3.3 and 5.1.0 respectively
Script alert updates from NCO for wave downstream
Add override for COMIN_WAV_RTOFS in emc mode for waveprep job
Issue #197: place CDATE specific sections of config.anal and config.prep inside RUN_ENVIR=emc blocks. These sections are use for retrospective parallels and therefore do not need to be executed in operations (NCO).
modified: JGLOBAL_FORECAST
modified: JGLOBAL_FORECAST to make it work for both emc and nco running environments.
modified: JGLOBAL_FORECAST A test showed that jobid is not defined in JGLOBAL_FORECAST running in the Rocoto environment. jobid is defined in ./env files. Defining DATA without sourcing ./env/$nachine.env caused the script to fail. Move the definitin of DATA after sourcing env parameters
modified: checkout.sh to use WAFS tag gfs_wafs.v6.0.16
modified: checkout.sh to update UPP to upp_gfsv16_release.v1.1.1, a minor syntax bug fix
modified: link_fv3gfs.sh to 1) use hard copies of external fix fields and executable for NCO installation 2) use soft links for all other files and directories for both NCO and EMC installations
Compared local files in NCO implementation directory with release/gfs.v16.0.0 branch, changes made by NCO(Jen Yang) in the following files are either accepted or rejected.
create a new branch release/gfsv16.0.0.nco to merge changes made by NCO in /gpfs/dell1/nco/ops/nwpara/gfs-v16/gfs.v16.0.1 back to EMC's repository
update for the wave parm so that the wave model will look for the correct restart for when gfs is not run every cycle
updates for checking if RTOFS files exist and only processing RTOFS files for needed fhr
commit b644f792bbb939d6ab25957b93f812aa02b497a9
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon Mar 8 15:07:34 2021 +0000
Bufr sounding job update
- set DO_BUFRSND to NO by default
- in config.postsnd, if FHMAX_GFS is less than 180 then set DO_BUFRSND to FHMAX_GFS
Refs: #238
commit 86b0345a550a7128fd6420befcb793a94411e4db
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon Mar 8 14:09:40 2021 +0000
Add pull of IAU increment files off HPSS for free-forecast
Refs: #178
commit efdf917a843cc301a2fe7d5386aea1e29dd02c46
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Fri Mar 5 21:29:22 2021 +0000
Update in wave prep script and add ability to pull warm starts
- Update getic job to detect warm start config info and pull warm start RESTART
files off HPSS and place in ROTDIR; just for retro ICs, will add ops after implementation
- Add check to JGLOBAL_WAVE_PREP for prior cycle rtofs ROTDIR symlink;
normally cycled mode would have already created this during prior cycle
so added check for use in free-forecast mode
Refs: #178
commit 65fce4ce9b2d7e63a0bd038fff1a206f8b4a5815
Merge: 084cb6aa 9027452b
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Fri Mar 5 17:13:37 2021 +0000
Merge remote-tracking branch 'origin/release/gfsv16.0.0' into feature/issue238
* origin/release/gfsv16.0.0:
Add config.resources.nco.static
ecflow forecast job resource updates from NCO v16.0.7 install
Refs: #238
commit be0ed38a53d2422923ccd5380d610785e61deafa
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Mar 4 18:06:24 2021 +0000
Consolidate/cleanup init config and script
Refs: #178
commit d32199cd58329b4b2c9c5c3e84e7d8d0801305e0
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Mar 4 17:43:58 2021 +0000
Move getic/init settings from scripts to configs
- consolidate RETRO variable in config.getic
- move configuration settings from getic/init scripts to configs
- add dependency to setup_workflow_fcstonly.py
- add getic and init to task list at top of config.resources
Refs: #178
commit 084cb6aacc0c65440c5fecd3010a1b691ee98d87
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Mar 4 15:22:42 2021 +0000
Update EMC_verif-global tag to verif_global_v1.13.5
Refs: #238,#279
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