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update README.md
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jlduan committed May 10, 2019
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Expand Up @@ -61,15 +61,15 @@ Reprogram-Seq leverages organ-specific cell atlas data with single-cell perturba
## Notebooks

### Jupyter notebooks (in development)
[Convertion of R objects to Python objects](https://nbviewer.jupyter.org/github/jlduan/Reprogram-Seq/blob/master/notebooks/jupyter_notebooks/conversion.ipynb)
[Conversion of R objects to Python objects](https://nbviewer.jupyter.org/github/jlduan/Reprogram-Seq/blob/master/notebooks/jupyter_notebooks/conversion.ipynb)
[Exploration of recent advances in single cell visualization](https://nbviewer.jupyter.org/github/jlduan/Reprogram-Seq/blob/master/notebooks/jupyter_notebooks/embedding.ipynb)
        [UMAP](https://nbviewer.jupyter.org/github/jlduan/Reprogram-Seq/blob/master/notebooks/jupyter_notebooks/embedding_umap.ipynb)
        [Fl-tSNE](https://nbviewer.jupyter.org/github/jlduan/Reprogram-Seq/blob/master/notebooks/jupyter_notebooks/embedding_fitsne.ipynb)
...



### HTML documents created from R Markdown (recreate figures)
### HTML documents created from R Markdown (to recreate figures)
[Unbiased reprogramming (4.3 Mb)](http://htmlpreview.github.com/?https://github.com/jlduan/Reprogram-Seq/blob/master/notebooks/rmarkdowns/unbiased_reprogramming.html)
[Rational epicardial reprogramming (2.9 Mb)](http://htmlpreview.github.com/?https://github.com/jlduan/Reprogram-Seq/blob/master/notebooks/rmarkdowns/rational_epicardial_reprogramming.html)
[Global reprogramming of transcription (5.0 Mb)](http://htmlpreview.github.com/?https://github.com/jlduan/Reprogram-Seq/blob/master/notebooks/rmarkdowns/global_reprogramming_of_transcription.html)
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