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Add surface-of-section methods #560

Merged
merged 18 commits into from Mar 29, 2023
Merged

Add surface-of-section methods #560

merged 18 commits into from Mar 29, 2023

Commits on Mar 29, 2023

  1. Prototype of new surface-of-section functionality that includes integ… 

    …rator, SOS function, and plotting function; also working physical outputs and changes for the individual time arrays that these integrations have
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  2. Working version of SOS integration in C for 3D orbits

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  3. Allow individual psi integration variables per orbit; don't support d… 

    …psi for SOS integration
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  4. Add some initial tests of 3D SOS code

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  5. Multiple-orbits tests of 3D SOS

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  6. Add codecov token for hopefully more reliable uploads

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  7. Various SOS testing tweaks to provide fuller coverage, including of q… 

    …uantity support and warnings
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  8. Add 2D SOS integration, in Python and C

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  9. Add tests of 2D SOS integration

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  10. No quantity use when plotting the SOS (similar to plot)

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  11. SOS test tweaks to increase coverage

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  12. Check that an orbit leaves the SOS

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  13. Don't support 1D SOS, fix surface parsing issue

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  14. Test that slicing of individual time arrays works as expected

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  15. Check that time and psi increase together in SOS integration

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  16. Move SOS surface check before any integration and test for multiple o… 

    …rbits
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  17. Add SOS to HISTORY

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  18. Add documentation on surfaces of section

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