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A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
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DailyDreaming Merge pull request #2612 from DataBiosphere/revert-2556-issues/2553-c…
…ross-device-issue

Revert "Update fileJobStore to resolve symlinks (resolves #2553)"
Latest commit 849ce59 Apr 18, 2019
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attic xrange. May 17, 2018
contrib/azure Don't reserve space for root on Mesos disks Apr 24, 2017
dashboard Specify region in prometheus. Nov 5, 2018
docker
docs Merge pull request #2566 from /issues/2565-update-contributing Apr 5, 2019
src/toil Revert "Update fileJobStore to resolve symlinks (resolves #2553)" Apr 18, 2019
.gitignore Gitlab tests working with python3. Jan 30, 2019
.gitlab-ci.yml Don't re-clone Toil; use the Toil that Gitlab is actually trying to test Feb 28, 2019
.travis.yml
CODE_OF_CONDUCT.md Create CODE_OF_CONDUCT.md Sep 21, 2017
CONTRIBUTING.md Fix dead link in CONTRIBUTING.md Apr 2, 2017
LICENSE Create LICENSE Apr 20, 2018
Makefile Go back to running all tests Apr 11, 2019
README.rst be specific about what "cross platform" means Nov 26, 2018
ROADMAP.md
jenkins.sh Short tests. Nov 2, 2018
run_tests.py
setup.cfg Upgrade pytest so we can use ALLOW_BYTES Jun 22, 2018
setup.py Gitlab tests working with python3. Jan 30, 2019
version_template.py Ensure TOIL_DOCKER_REGISTRY variable is in version_template. Apr 5, 2019

README.rst

ATTENTION: Toil has moved from https://github.com/BD2KGenomics/toil to https://github.com/DataBiosphere/toil as of July 5th, 2018.

Toil is a scalable, efficient, cross-platform (Linux & macOS) pipeline management system, written entirely in Python, and designed around the principles of functional programming.

  • Check the website for a description of Toil and its features.
  • Full documentation for the latest stable release can be found at Read the Docs.
  • See our occasional blog for tutorials.
  • Google Groups discussion forum and videochat invite list.
Join the chat at https://gitter.im/bd2k-genomics-toil/Lobby
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