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ggplot 1.0 breaks a phyloseq vignette #347

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joey711 opened this issue May 23, 2014 · 2 comments
Closed

ggplot 1.0 breaks a phyloseq vignette #347

joey711 opened this issue May 23, 2014 · 2 comments
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joey711 commented May 23, 2014

Build report errors now posting on both devel and release BioC servers for all OS platforms.

http://www.bioconductor.org/checkResults/3.0/bioc-LATEST/phyloseq/perceval-buildsrc.html

The error is traced back to one or more "defunct" functions in ggplot2. Will attempt to update both devel and release versions to fix this issue ASAP.

joey
@joey711 joey711 self-assigned this May 23, 2014
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joey711 commented May 23, 2014

The good news is, there's a 1.0 update to ggplot2 :)

joey711 added a commit that referenced this issue May 24, 2014
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Merge pull request #348 from joey711/ggplot2v100-bugfix
35916f6 
1.9.8 ggplot2 1.0.0 bugfix, mt enhancement

CHANGES IN VERSION 1.9.8
-------------------------

USER-VISIBLE CHANGES

	- `mt` includes other corrections, FDR by default.

	- Resolves [Issue 59](#59)

CHANGES IN VERSION 1.9.7
-------------------------

BUG FIXES

	- Now requires ggplot2 version 1.0.0

	- Fixes bug in which ggplot 1.0 breaks in a phyloseq vignette 

	- Resolves [Issue 347](#347)
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joey711 commented May 24, 2014

Done.

#348

@joey711 joey711 closed this as completed May 24, 2014
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