typos in Utility.R

[elizabethmcd]

Lines 256-269 are missing closing parentheses:

  random.genes.hexb <- hexbin(bkgd.individual.Zscores$zscores$`Random Genes`$PC,
    bkgd.individual.Zscores$zscores$`Random Genes`$NRED,
    ybnds = c(min(all_scores_y), max(all_scores_y)),
    xbnds = c(min(all_scores_x), max(all_scores_x)))

  random.annotated.genes.hexb <- hexbin(bkgd.individual.Zscores$zscores$`Random Annotated Genes`$PC,
    bkgd.individual.Zscores$zscores$`Random Annotated Genes`$NRED,
    ybnds = c(min(all_scores_y), max(all_scores_y)),
    xbnds = c(min(all_scores_x), max(all_scores_x)))

  random.identical.annotated.genes.hexb <- hexbin(bkgd.individual.Zscores$zscores$`Genes with the same annotation`$PC,
    bkgd.individual.Zscores$zscores$`Genes with the same annotation`$NRED,
    ybnds = c(min(all_scores_y), max(all_scores_y)),
    xbnds = c(min(all_scores_x), max(all_scores_x)))

TbasCO installs correctly with these fixes, but with the following warnings:

Note: possible error in 'Model_Module(RNAseq.data, ': unused arguments (Yrange, bkgd.traits) 
Note: possible error in 'Model_Module(RNAseq.data, ': unused arguments (Yrange, bkgd.traits) 
Note: possible error in 'Model_Module(RNAseq.data, ': unused arguments (Yrange, bkgd.traits) 
Note: possible error in 'Model_Module(RNAseq.data, ': unused arguments (Yrange, bkgd.traits) 
Note: possible error in 'Model_Module(RNAseq.data, ': unused arguments (Yrange, bkgd.traits) 
Note: possible error in 'Model_Module(RNAseq.data, ': unused arguments (Yrange, bkgd.traits) 
Note: possible error in 'Model_Module(RNAseq.data, ': unused arguments (Yrange, bkgd.traits) 
Note: break used in wrong context: no loop is visible