This is my R programming coding trascript for each chapter in my thesis "SPATIOTEMPORAL MODELS FOR EXPLORING VARIABILITY IN SCALLOP CONDITION ACROSS THE BAY OF FUNDY" https://dalspace.library.dal.ca//handle/10222/83249
Survey Data (Request to jessica.sameoto@dfo-mpo.gc.ca):
bof.mwsh.JuneJuly.2012to2019.clean.csv is the MWSH dataset and is used for modeling the WMC. bof.shf.unlined.gear.2012to2019.csv is the SHF dataset and is used to create the SH dataset to modeling the HMC.
Environment Data:
"BathyCHS_GEBCO_SEAM_mixedData_BOF_ExtentClip_100m_LatLong.asc" is the DEM depth
"BtmTemp_Jul_2012.asc", "BtmTemp_Jul_2013.asc", "BtmTemp_Jul_2014.asc", "BtmTemp_Jul_2015.asc", "BtmTemp_Jul_2016.asc", "BtmTemp_Jul_2017.asc", "BtmTemp_Jul_2018.asc", "BtmTemp_Jul_2019.asc" are BNAM temperature in July from 2012 to 2019. "BtmStress_Jul_2012.asc", "BtmStress_Jul_2013.asc", "BtmStress_Jul_2014.asc", "BtmStress_Jul_2015.asc", "BtmStress_Jul_2016.asc", "BtmStress_Jul_2017.asc", "BtmStress_Jul_2018.asc", "BtmStress_Jul_2019.asc" are BNAM stress in July from 2012 to 2019.
"BtmSalinity_Jul_2012.asc", "BtmSalinity_Jul_2013.asc", "BtmSalinity_Jul_2014.asc", "BtmSalinity_Jul_2015.asc", "BtmSalinity_Jul_2016.asc", "BtmSalinity_Jul_2017.asc", "BtmSalinity_Jul_2018.asc", "BtmSalinity_Jul_2019.asc" are BNAM salinity in July from 2012 to 2019.
Shape Files: SPA1A_polygon_NAD83.dbf SPA1A_polygon_NAD83.prj SPA1A_polygon_NAD83.shp SPA1A_polygon_NAD83.shp.xml SPA1A_polygon_NAD83.shx
SPA1B_polygon_NAD83.dbf SPA1B_polygon_NAD83.prj SPA1B_polygon_NAD83.shp SPA1B_polygon_NAD83.shp.xml SPA1B_polygon_NAD83.shx
SPA4_polygon_NAD83.dbf SPA4_polygon_NAD83.prj SPA4_polygon_NAD83.shp SPA4_polygon_NAD83.shp.xml
BoF_Strata_extent4Joy.dbf BoF_Strata_extent4Joy.prj BoF_Strata_extent4Joy.shp BoF_Strata_extent4Joy.shp.xml SPA4_polygon_NAD83.shx
SPA5_polygon_NAD83.dbf SPA5_polygon_NAD83.prj SPA5_polygon_NAD83.shp SPA5_polygon_NAD83.shp.xml SPA5_polygon_NAD83.shx
"BoF_Strata_extent4Joy.shp" and "SPA5_polygon_NAD83.shp" are used to create our study area.