fix: 1-based bin IDs in hicpro matrices

js2264 · Jun 3, 2023 · 075f726 · 075f726
1 parent 55c6079
commit 075f726
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/R/parse-hicpro.R b/R/parse-hicpro.R
@@ -23,7 +23,7 @@ NULL
 
     file <- gsub('~', Sys.getenv('HOME'), file)
 
-    # Get raw counts for bins from hic
+    # Get counts for bins from hic
     matrix_df <- vroom::vroom(
         file, 
         col_names = FALSE, 
@@ -34,7 +34,7 @@ NULL
 
     # Get anchors from hicpro
     anchors <- .getHicproAnchors(bed)
-    # anchors$bin_id <- anchors$bin_id+1
+    anchors$bin_id <- anchors$bin_id+1
     an1 <- left_join(
         matrix_df, as.data.frame(anchors), by = c('start_idx' = 'bin_id')
     ) |> as("GRanges")