fix: skip fourDNData pairs parsing for now #21
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| name: biocbook | |
| on: | |
| push: | |
| branches: | |
| - devel | |
| - RELEASE_** | |
| jobs: | |
| build-push: | |
| runs-on: ubuntu-latest | |
| name: build-book (${{ github.ref_name }}) | |
| permissions: | |
| contents: write | |
| packages: write | |
| steps: | |
| - name: 🧾 Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: ⏳ Collect Workflow Telemetry | |
| uses: runforesight/workflow-telemetry-action@v1 | |
| - name: 🐳 Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: 🐳 Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: 📝 Get book info | |
| id: info | |
| env: | |
| OWNER: ${{ github.repository_owner }} | |
| run: | | |
| Pkgname=$(grep -m1 -E '^Package: +' DESCRIPTION | sed -E 's/.*: +//') | |
| echo Pkgname=${Pkgname} >> "${GITHUB_ENV}" | |
| pkgname=${Pkgname,,} | |
| echo pkgname=${pkgname} >> "${GITHUB_ENV}" | |
| owner=${OWNER,,} | |
| echo owner=${owner} >> "${GITHUB_ENV}" | |
| echo pkgversion=$(grep -m1 -E '^Version: +' DESCRIPTION | sed -E 's/.*: +//') >> "${GITHUB_ENV}" | |
| - name: 🔐 Log in to the Github Container registry | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ env.owner }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: 🏷 Get metadata for Docker | |
| id: meta | |
| uses: docker/metadata-action@v4 | |
| with: | |
| images: ghcr.io/${{ env.owner }}/${{ env.pkgname }} | |
| tags: | | |
| ${{ github.ref_name }} | |
| ${{ env.pkgversion }} | |
| type=raw,value=latest,enable=${{ github.ref == format('refs/heads/{0}', 'devel') }} | |
| - name: 📦 Install, build and check package in local Docker image | |
| id: docker | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: . | |
| load: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| build-args: | | |
| BIOC_VERSION=${{ github.ref_name }} | |
| - name: 🚀 Push local Docker image to ghcr.io | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: . | |
| push: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| build-args: | | |
| BIOC_VERSION=${{ github.ref_name }} | |
| - name: 📚 Recover pkg artifacts generated during build in local Docker container (pkg bundle and book) | |
| env: | |
| IMG: ${{ steps.docker.outputs.ImageID }} | |
| run: | | |
| SHA=$(docker container create ${{ env.IMG }}) | |
| docker container cp ${SHA}:/${{ env.Pkgname }}_${{ env.pkgversion }}.tar.gz . | |
| tar --extract --gzip --file ${{ env.Pkgname }}_${{ env.pkgversion }}.tar.gz | |
| echo bundle_path=${{ env.Pkgname }}_${{ env.pkgversion }}.tar.gz >> "${GITHUB_ENV}" | |
| echo book_path=${{ env.Pkgname }}/inst/doc/book/ >> "${GITHUB_ENV}" | |
| ls -l ./ | |
| ls -l ${{ env.Pkgname }} | |
| ls -l ${{ env.Pkgname }}/inst/doc/book/ | |
| - name: 🏷 Get gh-branch directory to deploy to | |
| run: | | |
| echo target_folder=$(echo ${{ github.ref_name }} | sed 's,RELEASE_,,' | tr '_' '.') >> "${GITHUB_ENV}" | |
| - name: 🚀 Deploy book to Github Pages on versioned branch | |
| uses: JamesIves/github-pages-deploy-action@v4.4.3 | |
| with: | |
| folder: ${{ env.book_path }}/ | |
| target-folder: docs/${{ env.target_folder }}/ | |
| branch: gh-pages | |
| clean: false | |
| - name: 💾 Upload package bundle artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: bundle | |
| path: ${{ env.bundle_path }} | |
| - name: 💾 Upload book artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: book | |
| path: ${{ env.book_path }} |